Plant FIBer expression Database

Lus10010018 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02160 42 / 2e-05 unknown protein
AT5G61710 41 / 5e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025039
[exp]
213 / 3e-72 AT5G61710 51 / 2e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G199100
[exp]
70 / 2e-15 AT4G02160 50 / 9e-08 unknown protein
Potri.014G123500
[exp]
58 / 4e-11 AT5G61710 42 / 6e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10010018 pacid=23176659 polypeptide=Lus10010018 locus=Lus10010018.g ID=Lus10010018.BGIv1.0 annot-version=v1.0
ATGCAGCTGATCAAGATCGCTCTGTACATGATCACCAACAAATCCGGCAAAGGAAAACCATCGTCCGCCGCCGCCAAGTGGAAGAAATTGTTCGGCCTTG
TTCGGCCACTGCACCTCGAGAGCAGCAATCAATTACCATCATCATCATCACCACCGCCGGTACCCTGCATCGAGGCGCCACAGCGGGATCCGGAAGGGGA
TCGGGCGTTAGAGTCGCCGTTGGCGTCACCGGGGGCGATGACGCCGTACGCCTCGGCGGACAATCCAGAGGGGAATGATCAGGAGGAGAACGAGAATTAC
TACGACAGAATTGAAGGCGACGAGATGATCGATACAAAGACCGAGGAATTCATCGCCCGATTTTATCAACAGATTATGCTCCAAGACGAGACCGGAACGC
CGTCGTAA
AA sequence
>Lus10010018 pacid=23176659 polypeptide=Lus10010018 locus=Lus10010018.g ID=Lus10010018.BGIv1.0 annot-version=v1.0
MQLIKIALYMITNKSGKGKPSSAAAKWKKLFGLVRPLHLESSNQLPSSSSPPPVPCIEAPQRDPEGDRALESPLASPGAMTPYASADNPEGNDQEENENY
YDRIEGDEMIDTKTEEFIARFYQQIMLQDETGTPS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02160 unknown protein Lus10010018
[exp]
0 1
AT5G60770 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE T... Lus10016119
[exp]
1.0 0.8627
AT2G40220 AP2_ERF ATABI4, GIN6, S... SUCROSE UNCOUPLED 6, SUGAR-INS... Lus10009834
[exp]
2.0 0.8530
AT1G63740 Disease resistance protein (TI... Lus10010546
[exp]
3.0 0.8524
AT1G54410 dehydrin family protein (.1) Lus10020271
[exp]
3.2 0.7780
AT4G37110 Zinc-finger domain of monoamin... Lus10021004
[exp]
3.7 0.7912
AT3G43660 Vacuolar iron transporter (VIT... Lus10029776
[exp]
5.5 0.8092
AT1G14200 RING/U-box superfamily protein... Lus10005237
[exp]
6.3 0.8149
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Lus10010458
[exp]
8.1 0.7328
Lus10006287
[exp]
8.2 0.8397
AT1G08090 LIN1, ACH1, NRT... LATERAL ROOT INITIATION 1, nit... Lus10016120
[exp]
12.5 0.7635

Lus10010018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.