Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38700 152 / 3e-47 unknown protein AT4G02170 127 / 2e-37 unknown protein AT5G57510 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025041 [exp] 284 / 2e-99 AT5G38700 150 / 2e-46 unknown protein Lus10001456 [exp] 157 / 6e-49 AT5G38700 132 / 4e-39 unknown protein Lus10002433 [exp] 65 / 8e-14 AT5G38700 69 / 7e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198800 [exp] 169 / 5e-54 AT5G38700 157 / 3e-49 unknown protein Potri.014G123400 [exp] 158 / 1e-49 AT5G38700 144 / 4e-44 unknown protein Potri.014G139900 [exp] 45 / 8e-06 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010019 pacid=23176709 polypeptide=Lus10010019 locus=Lus10010019.g ID=Lus10010019.BGIv1.0 annot-version=v1.0 ATGGCGAGGAAACAGAGTAATGTGGGTCGACGACCATGGAACATCCTCCGGCTAGCGTTGCTATGGGCCAGAAAGGGAGGGGTGTTCAAGAGACGGTTGA TGGTTGACCTCCGATTAGTCCCCAAGTTCATCAAGAGCTTAGCGCCTAATTCTTCTTCTTCGGGTCCTCGTAGCCAGATTGGATTCTATGGCGAGAGGGA GCTCTCGTTCGATAAGACTCCTCTTTTCCAGGTGAAGATGCACCGCCCTGCTTCTATGCGATTCATCATCCCTTGCATTACTCCGCAGCAGGCTGACTTC GATTACGATTTCGAAGAGTTCTGCAACAGGCAGTATGGTGAAGAGGAGGAGCAGCCTTCCACTCGTAGCAGCTTCACCGAACGTGGCATCACTGACGATA ATTGCGAAGAAGACGAGGACTGTGTGGCCGAGGAGGAGGGAAGTGAAGGGATTGACTCAAAAGCTGAGAAGTTCATAGCTCAGTTCTATGAACAGATGAA ACTGCAGAGACAGATATCATATCTGGAATACAAAAAGTGA
AA sequence Show only first row Show all	>Lus10010019 pacid=23176709 polypeptide=Lus10010019 locus=Lus10010019.g ID=Lus10010019.BGIv1.0 annot-version=v1.0 MARKQSNVGRRPWNILRLALLWARKGGVFKRRLMVDLRLVPKFIKSLAPNSSSSGPRSQIGFYGERELSFDKTPLFQVKMHRPASMRFIIPCITPQQADF DYDFEEFCNRQYGEEEEQPSTRSSFTERGITDDNCEEDEDCVAEEEGSEGIDSKAEKFIAQFYEQMKLQRQISYLEYKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38700			unknown protein		Lus10010019 [exp]	0	1
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	2.8	0.8394
AT1G65090			unknown protein		Lus10009554 [exp]	3.2	0.8024
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	3.2	0.8152
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	4.2	0.7939
AT5G42860			unknown protein		Lus10009749 [exp]	8.0	0.8026
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	8.5	0.7633
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	12.0	0.8059
AT5G64880			unknown protein		Lus10035848 [exp]	13.1	0.7613
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10028032 [exp]	14.4	0.7153
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	19.7	0.7251

Compare expression of checked genes

Lus10010019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.