Plant FIBer expression Database

Lus10010020 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02120 623 / 0 CTP synthase family protein (.1)
AT3G12670 550 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1)
AT1G30820 508 / 2e-176 CTP synthase family protein (.1)
AT4G20320 500 / 4e-173 CTP synthase family protein (.1.2)
AT2G34890 480 / 2e-165 CTP synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025042
[exp]
764 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1)
Lus10001218
[exp]
527 / 0 AT1G30820 894 / 0.0 CTP synthase family protein (.1)
Lus10038403
[exp]
526 / 0 AT1G30820 897 / 0.0 CTP synthase family protein (.1)
Lus10025043
[exp]
165 / 7e-49 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G123200
[exp]
683 / 0 AT4G02120 918 / 0.0 CTP synthase family protein (.1)
Potri.010G176500
[exp]
531 / 0 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1)
Potri.008G080100
[exp]
530 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1)
Potri.003G157900
[exp]
528 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1)
Potri.001G073100
[exp]
519 / 2e-180 AT1G30820 901 / 0.0 CTP synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF00117 GATase Glutamine amidotransferase class-I
CL0023 P-loop_NTPase PF06418 CTP_synth_N CTP synthase N-terminus
Representative CDS sequence
>Lus10010020 pacid=23176682 polypeptide=Lus10010020 locus=Lus10010020.g ID=Lus10010020.BGIv1.0 annot-version=v1.0
ATGGAAGCTGAAAGGAAGATGAAGTACGTGCTGGTGAGCGGAGGTGTTGTCAGTGGCCTTGGCAAGGGCGTCACAGCTAGCAGCGTCGGCGTCGTCCTCA
AAGCTTGCGGCCTTCGTGTCACCTCTATCAAAATAGATCCTTACTTGAATACTGATGCTGGTACCATGTCGCCTTTTGAGCATGGGGAGGTTTTTGTTCT
TGATGACGGCGGAGAGGTTGACTTGGATTTGGGTAACTATGAGCGTTTCCTCGATGTGACACTTACCAAAGACAATAACATCACAACTGGGAAGATATTT
CAGTCTGTTATTGAGAAGGAAAGGAGAGGGGATTATCTTGGAAAGACTGTTCAGAAAACAAAGCCTACACAGCACAGTGTGCGGGAACTGAGAGCATTAG
GCTTAACTCCTAATCTGTTGGCATGCCGTTCAGCTCAGCCTTTATTGAAGAATACGAAGGAGAAACTCTCTCAGTTTTGTCATGTTCCGGAAGCTAATAT
TCTTAATATCCATGATGTCCCAAACATTTGGCACATCCCTCTGTTACTTAGGAACCAAAGAGCTCATCATGCAATCCTTAAACAGCTAAACTTATCCAGT
GTTGCGACACCTCCTGACTTGCGAGATTGGACCAAGATGGCAGAGACTTATGATAATCTAACAAATTCTGTAAGGATTGCAATGGTGGGGAAATATGTTG
GTTTAACCGATTCATATCTTTCTGTTGTGAAGGCTCTTCTTCATGCTTGTATTGCCTGTTCATTAAAACCATCTATTGACTGGGTTGCAGCTTCTGATCT
TGAGGATGAGAGTGCAAAATTGACACCAGAAGCTCATGCTGTTGCATGGGACACTTTGAGGAATGCGTCTTGCGTCTTAGTCCCCGGAGGTTTCGGGGAT
CGTGGTGTGAATGGGATGATATTGGCCGCCAAGTATGCTAGAGAGAACAAGATCCCCTATCTTGGAATTTGCTTGGGCATGCAGATTTCCGTGATTGAAT
TTGCCAGATCTGTCTTGGGTATGGAGAAAGCAAATAGCGCAGAGTTCGATGAGGAGACACCTGATCCTGTTGTAATTTTCATGCCCGAGGGTTCAAGAAC
ACACATGGGAAGCACAATGCGACTGGGTTCTCGGAGGACACTTTTGCAGACATCCGACTGCATCACTGCAAAGTTGTATGGCAATCGTCAACATGTAGAT
GAACGCCATCGACATAGATATGAGGTAAACCCAGAGATCATTGAGGCTCTGGAGAAAGGTGGCCTAAAGTTTGTTGGCAAGGATGAAACCGGGAAGAGGA
TGGAGGTTCTGGAGCTTCCGAGTCATCCATTTTACGTGGGCGCACAATTTCATCCGGAATTCAAATCACGACCTAGGCGGCCATCAGCTTTATTTCTAGG
TCTTATATTAGCAGCTACAGGGAAGCTGGAAGAACACATAAACAGTAATGGTCGGAACAAAAACTGA
AA sequence
>Lus10010020 pacid=23176682 polypeptide=Lus10010020 locus=Lus10010020.g ID=Lus10010020.BGIv1.0 annot-version=v1.0
MEAERKMKYVLVSGGVVSGLGKGVTASSVGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTKDNNITTGKIF
QSVIEKERRGDYLGKTVQKTKPTQHSVRELRALGLTPNLLACRSAQPLLKNTKEKLSQFCHVPEANILNIHDVPNIWHIPLLLRNQRAHHAILKQLNLSS
VATPPDLRDWTKMAETYDNLTNSVRIAMVGKYVGLTDSYLSVVKALLHACIACSLKPSIDWVAASDLEDESAKLTPEAHAVAWDTLRNASCVLVPGGFGD
RGVNGMILAAKYARENKIPYLGICLGMQISVIEFARSVLGMEKANSAEFDEETPDPVVIFMPEGSRTHMGSTMRLGSRRTLLQTSDCITAKLYGNRQHVD
ERHRHRYEVNPEIIEALEKGGLKFVGKDETGKRMEVLELPSHPFYVGAQFHPEFKSRPRRPSALFLGLILAATGKLEEHINSNGRNKN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02120 CTP synthase family protein (.... Lus10010020
[exp]
0 1
AT4G02120 CTP synthase family protein (.... Lus10025042
[exp]
1.0 0.9589
AT1G31970 STRS1 STRESS RESPONSE SUPPRESSOR 1, ... Lus10004552
[exp]
2.4 0.9212
Lus10024551
[exp]
7.5 0.9028
AT5G07950 unknown protein Lus10021622
[exp]
7.9 0.8990
AT3G60510 ATP-dependent caseinolytic (Cl... Lus10028182
[exp]
12.2 0.9097
AT4G24940 ATSAE1A, AT-SAE... SUMO-activating enzyme 1A (.1) Lus10008977
[exp]
16.0 0.8940
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Lus10018090
[exp]
16.1 0.9068
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10020245
[exp]
16.1 0.9179
AT2G01220 Nucleotidylyl transferase supe... Lus10032989
[exp]
16.7 0.9116
AT5G14590 Isocitrate/isopropylmalate deh... Lus10013090
[exp]
18.0 0.9008

Lus10010020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.