Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 556 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 536 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 535 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 519 / 4e-178 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 505 / 1e-172 COBL11 COBRA-like protein 11 precursor (.1) AT1G09790 116 / 8e-28 COBL6 COBRA-like protein 6 precursor (.1) AT5G60920 112 / 4e-26 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 110 / 8e-26 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 107 / 1e-24 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 105 / 4e-24 COBL2 COBRA-like protein 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025045 [exp] 1021 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10016847 [exp] 586 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 581 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 514 / 1e-175 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 508 / 2e-173 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10035131 [exp] 114 / 3e-27 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 114 / 3e-27 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 114 / 9e-27 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 113 / 1e-26 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001100 [exp] 603 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 590 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.011G135200 [exp] 536 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 527 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.004G219200 [exp] 120 / 4e-29 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117200 [exp] 118 / 2e-28 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 114 / 5e-27 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 110 / 9e-26 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.015G060100 [exp] 109 / 2e-25 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 108 / 4e-25 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10010022 pacid=23176689 polypeptide=Lus10010022 locus=Lus10010022.g ID=Lus10010022.BGIv1.0 annot-version=v1.0 ATGTACTCTCCGCATTGGAGGGGAACTACTGCAATATATTTACTCTATTCTCGTCCGCTGCGCCCCAACACTCCGCTCCCTGCCGAAGTAGGGAACGGCA CCGTTTTCGCCGGTTCGTCTCAGCCCGACTTGAAGACCGCGATTCAGACCGCTGGGGATGCTACCCAGATGGAGGTTCAGGTTCAGTTGGTTGGTACTAG GTTTGGGCCGCCGCCGAATGCTACTAACTTTTTGCCGTTGCCGGCCAATGTGTCGCTGAGTAATGACGGATATGTTTGTCCTGACTCCAGAGTTGAAGGA AATATGAGATGGACATGTTGTGAAAGAAGAACCTCACCAACTAACTCCCCACCAAACCAAGCTCCGCAATCCAATTTCCCACCTGCCCAACCAGCCGACC TGTCCATAACCTACGACGTCCTAAGCACATACGACACCGACTACTGGGCACAAGTCACAATCTCCAACAGCCATCCACTAGCTCGGCTCGACAACTGGCA GCTGAGCTGGGATTGGACGAGGGACGAGTTCATCTTCGCCATGAAGGGCGCTTATCCTCTATCTCTCGACACATCGGAGTGCATATTCGGTTCCCAGGGT CAGCACTACCTGAAAATGGATTTCTCCCAAGCGCTGAACTGCCAGCGGAGGCCTACCGTCGTGGACTTACCCCGGGAGAGGGCAAATGATACGGATATCG GAAGGATCCCGTTCTGTTGCAGGAACGGGACCATCCTGCCTCCGGTTATGGATTCGAGTAAGGCGATGTCGATATTTCAAATGCATGTGTTCAAGATGCC CCCCGACTTGAACAGGACCGAGTTTGTCGTGCCGCAGGGCTGGAGGATTGGTACTGGTGCTAGCTTGAGCTCCCATTTTCAGTGTGGTTCTCCTGTTCAG GTGAGACCAACCCAATTCCCGGATCCAAGCGGATTACCATCAACAAGAACAGCAATCGCGACATGGCGAATCGCTTGCAACGTCGTAACCAAACCGAAAG GCGAGAACCCGAAATGTTGCGTCTCGTTCTCAGCTTTCTACAACGCATCCATAATCCCCTGTAACACCTGCGCCTGCGGAGGCTGCAACAACAATCCGAC CTGCAGCTCGAATTCGCAAGCCCTCTTATTATCATCTCGGACCCTAGCCATCCCGTTCGAGAACAGGACGACCGATTCCCTAGCTTGGGCAACAGTCAAC AAGAAATTCGTACCCGATCCTTTGCCTTGCGGGGACAACTGTGGCGTAACGATCCACTGGCACTTACTGTCAGATTTCAAAGACGGATGGACGGTCAGGA TGACTCTATTCAACTGGGGTCAAATGGCCTTCCAGGATTGGTTTGCTGTCGTGCAGCTGGACGAAAAAGCAGCGACTGGATTTGAGAATGTGTATTCTTT CAACGGCACCGTTTTGGCGAATTCCACTAATACTGTATTCTTCCAAGGTTTGCCTGGCTTGAATTTCCTGCTGCCTCTGAGTCCTCCTGGTAATCCCAAG AAGGATTATCCTGTTCCGGGTATGCAACAATCGATCATGTCGTTTTCGAAGACGAAAACGCCTGGGATTGATTTGGTTTCGGGAGATGGATTCCCGACGA AAGTGATGTTCAATGGTGAAGAGTGTGTGATTCCTACGTTTCTACCTAGTAAAGGATGTAGAAGATTAGAAGGAAAAAATCCTGCAGGTTTCAGCTTTGT TCTCTGCCTTTTGGTAGGAATAGCTCTTTTGGCCAGACAGTAA
AA sequence Show only first row Show all	>Lus10010022 pacid=23176689 polypeptide=Lus10010022 locus=Lus10010022.g ID=Lus10010022.BGIv1.0 annot-version=v1.0 MYSPHWRGTTAIYLLYSRPLRPNTPLPAEVGNGTVFAGSSQPDLKTAIQTAGDATQMEVQVQLVGTRFGPPPNATNFLPLPANVSLSNDGYVCPDSRVEG NMRWTCCERRTSPTNSPPNQAPQSNFPPAQPADLSITYDVLSTYDTDYWAQVTISNSHPLARLDNWQLSWDWTRDEFIFAMKGAYPLSLDTSECIFGSQG QHYLKMDFSQALNCQRRPTVVDLPRERANDTDIGRIPFCCRNGTILPPVMDSSKAMSIFQMHVFKMPPDLNRTEFVVPQGWRIGTGASLSSHFQCGSPVQ VRPTQFPDPSGLPSTRTAIATWRIACNVVTKPKGENPKCCVSFSAFYNASIIPCNTCACGGCNNNPTCSSNSQALLLSSRTLAIPFENRTTDSLAWATVN KKFVPDPLPCGDNCGVTIHWHLLSDFKDGWTVRMTLFNWGQMAFQDWFAVVQLDEKAATGFENVYSFNGTVLANSTNTVFFQGLPGLNFLLPLSPPGNPK KDYPVPGMQQSIMSFSKTKTPGIDLVSGDGFPTKVMFNGEECVIPTFLPSKGCRRLEGKNPAGFSFVLCLLVGIALLARQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	0	1
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	1.0	0.8948
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016632 [exp]	2.0	0.8862
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	3.3	0.8254
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10016631 [exp]	6.6	0.8027
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	10.4	0.8499
AT5G67265			unknown protein		Lus10042633 [exp]	10.6	0.8466
AT2G44130			Galactose oxidase/kelch repeat...		Lus10016214 [exp]	14.7	0.8071
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10028030 [exp]	17.1	0.8620
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	17.3	0.8838
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10037465 [exp]	18.6	0.8553

Compare expression of checked genes

Lus10010022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.