Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 87 / 2e-20 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 80 / 8e-18 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 79 / 3e-17 COBL8 COBRA-like protein 8 precursor (.1) AT4G27110 52 / 4e-08 COBL11 COBRA-like protein 11 precursor (.1) AT3G20580 47 / 1e-06 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025045 [exp] 152 / 2e-43 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10003897 [exp] 95 / 6e-24 AT4G01070 218 / 1e-67 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10016847 [exp] 76 / 3e-16 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10037720 [exp] 74 / 9e-16 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 51 / 1e-07 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 49 / 8e-07 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G125300 [exp] 90 / 3e-21 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.010G001100 [exp] 88 / 1e-20 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.011G135200 [exp] 58 / 4e-10 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 57 / 8e-10 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010023 pacid=23176687 polypeptide=Lus10010023 locus=Lus10010023.g ID=Lus10010023.BGIv1.0 annot-version=v1.0 ATGGCGAAATCCCACAGCGGCGGAACAACAATATCCTCTGTTCTTCCAATTCCACTGCTAATCACTCTCATCTCCCTCCTCGTCTCCAAATCTCTCGCCC AGCCCACACCTTCCTCGCCTCTTCCCCCGCCGCCGATCACTCAGAAAACATCATGCTCCGGCGTATTCGTCGCCTACGCCACCGACGGCGGTGGATTCGC GATCCCGCCGAACGACCCTTCCAACCAGGCGTACCGATTCTCCTCGATCCTAACCTCCGCCAACACCGGCCGCACCGAGCTCAAGGCGTGGCGGGTATTC GTCGAATTCCAATTCGACGAGCTGCTGGTCTCCGCCGACAAGGCCGTGCTCGCCGATGGGACTCCGTGTTGGTCCCGGATAATTGATGTGCAACAAAAAT ATGTACCACCAATATTAAAGCACCACAAAATTAGTTGGATCTCTAACCAACTAATTGAATTCCCACCAATATTAACCCCCACCTCCAATTTAGTGCACAT GGAAATTAGTTGGGGATTCAACTAA
AA sequence Show only first row Show all	>Lus10010023 pacid=23176687 polypeptide=Lus10010023 locus=Lus10010023.g ID=Lus10010023.BGIv1.0 annot-version=v1.0 MAKSHSGGTTISSVLPIPLLITLISLLVSKSLAQPTPSSPLPPPPITQKTSCSGVFVAYATDGGGFAIPPNDPSNQAYRFSSILTSANTGRTELKAWRVF VEFQFDELLVSADKAVLADGTPCWSRIIDVQQKYVPPILKHHKISWISNQLIEFPPILTPTSNLVHMEISWGFN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	0	1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	3.3	0.8254
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	4.9	0.7774
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10005324 [exp]	11.5	0.7688
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	17.2	0.7556
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	18.7	0.7114
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	19.8	0.7883
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	28.9	0.7296
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	33.7	0.6761
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	49.7	0.7621
AT1G30870			Peroxidase superfamily protein...		Lus10020864 [exp]	50.9	0.7136

Compare expression of checked genes

Lus10010023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.