Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G62660	571 / 0	GATL7	galacturonosyltransferase-like 7 (.1)
AT1G02720	528 / 4e-177	GATL5	galacturonosyltransferase 5 (.1.2)
AT4G02130	528 / 7e-177	GATL6, LGT10	galacturonosyltransferase 6 (.1.2.3)
AT1G70090	418 / 1e-134	GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
AT1G24170	401 / 4e-128	GATL8, LGT9	GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
AT3G28340	392 / 3e-125	GolS8, GATL10	galactinol synthase 8, galacturonosyltransferase-like 10 (.1)
AT3G06260	375 / 5e-119	GolS9, GATL4	galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
AT3G50760	369 / 8e-117	GATL2	galacturonosyltransferase-like 2 (.1)
AT1G13250	367 / 4e-116	GATL3	galacturonosyltransferase-like 3 (.1)
AT1G19300	355 / 1e-111	ATGATL1, GATL1, PARVUS, GLZ1	PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10002440 [exp]	602 / 0	AT3G62660	597 / 0.0	galacturonosyltransferase-like 7 (.1)
Lus10000262 [exp]	527 / 2e-176	AT3G62660	405 / 2e-141	galacturonosyltransferase-like 7 (.1)
Lus10001461 [exp]	408 / 6e-132	AT3G62660	374 / 8e-130	galacturonosyltransferase-like 7 (.1)
Lus10010727 [exp]	408 / 2e-131	AT1G70090	546 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Lus10030821 [exp]	409 / 4e-131	AT1G70090	533 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Lus10029215 [exp]	404 / 1e-129	AT1G70090	543 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Lus10013296 [exp]	406 / 3e-129	AT1G70090	534 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Lus10012765 [exp]	381 / 3e-121	AT3G06260	519 / 0.0	galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Lus10016301 [exp]	378 / 4e-120	AT1G19300	506 / 0.0	PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.002G200200 [exp]	580 / 0	AT3G62660	593 / 0.0	galacturonosyltransferase-like 7 (.1)
Potri.014G125000 [exp]	574 / 0	AT3G62660	596 / 0.0	galacturonosyltransferase-like 7 (.1)
Potri.010G038300 [exp]	421 / 8e-136	AT1G70090	580 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Potri.008G192600 [exp]	393 / 2e-125	AT1G70090	556 / 0.0	GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Potri.008G116900 [exp]	386 / 2e-123	AT1G13250	509 / 0.0	galacturonosyltransferase-like 3 (.1)
Potri.014G040300 [exp]	380 / 8e-121	AT1G19300	489 / 1e-174	PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Potri.010G129400 [exp]	379 / 1e-120	AT1G13250	521 / 0.0	galacturonosyltransferase-like 3 (.1)
Potri.002G132900 [exp]	374 / 1e-118	AT1G19300	483 / 2e-172	PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Potri.007G031700 [exp]	373 / 2e-118	AT3G50760	459 / 5e-163	galacturonosyltransferase-like 2 (.1)
Potri.008G018100 [exp]	365 / 2e-115	AT3G06260	533 / 0.0	galactinol synthase 9, galacturonosyltransferase-like 4 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0110 [flax] [poplar]	GT-A	PF01501 [flax] [poplar]	Glyco_transf_8	Glycosyl transferase family 8

Representative CDS sequence

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>Lus10010025 pacid=23176705 polypeptide=Lus10010025 locus=Lus10010025.g ID=Lus10010025.BGIv1.0 annot-version=v1.0

ATGCTGTGGATTATGCGATTCTCTGGCTTCGTCTCCGCTGCAATGGCGATGATTATCCTCTCTCCTTCGCTTCAATCGTTCCCTCCGGCGGAAGCAATTC

GATCCTCTCACCTCGACAGCTACCTCCGTCTTCACCGCGGATTATCCTTCCGGAAGGCTCCTGTATTCCGCAATGCCGCCGAATGTAGGTCCTCGAACCG

GCAGAGTTTCGGCATCTGCGATCCTTCCTTAGTCCACGTCGCGATTACGCTCGACGTTGAGTACCTCCGCGGCTCTATCGCTGCGGTTCATTCGATTCTG

CAGCACTCGATGTGTCCGGAGAGCGTTTTCTTTCATTTCCTGGTCTCGGAGACGAATCTGGAAACCCTAGTCCGGTCAACTTTCCCCGAATTGAAGTTCA

AGGTGTATTACTTCGATCCGGAGATCGTGAGGAGCTTGATCTCGATGTCGGTGAGGCAGGCTCTAGAGCAGCCGCTGAATTACGCGAGGAATTACCTCGC

CGATCTGCTGGAGCCCTGCGTCCGCCGCGTCATCTACCTGGACTCCGATTTGGTTGTCGTCGACGACATTACCAAGCTGTGGACGACGAGCTTGGGGAAC

CGGACGATCGGCGCGCCGGAGTACTGCCACGCCAACTTCAGCAAGTACTTCACGGCGAGGTTCTGGTCGCTAGAGAAGAGGTACTCGCTGACGTTCGACG

AGCGGAGGCCGTGCTACTTCAACACCGGGGTGATGGTGATAGATCTGGTGAAATGGAGAAGAGTCGGCTACACGAAGCAGATAGAGAGGTGGATGGAGAT

CCAGAGGAACGACAGAATCTACGAGCTGGGGTCTTTGCCGCCATTCCTGCTAGTGTTTGCCGGGAACGTGGCGCCAATTGAGCACCGGTGGAACCAGCAT

GGGTTAGGCGGCGACAACGTCAGGGGAAGCTGCCGGGACTTACATCCCGGTCCGGTGAGCCTCTTGCATTGGTCCGGCAGCGGGAAACCGTGGAACAGAA

TCGACTCCAAGCGGCCGTCTCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAATCAAGGGAACTGAAACGACCCGAAATCCTGCTGCTT

CAAACCAGGAGGAGGACTGA

AA sequence

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>Lus10010025 pacid=23176705 polypeptide=Lus10010025 locus=Lus10010025.g ID=Lus10010025.BGIv1.0 annot-version=v1.0

MLWIMRFSGFVSAAMAMIILSPSLQSFPPAEAIRSSHLDSYLRLHRGLSFRKAPVFRNAAECRSSNRQSFGICDPSLVHVAITLDVEYLRGSIAAVHSIL

QHSMCPESVFFHFLVSETNLETLVRSTFPELKFKVYYFDPEIVRSLISMSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDITKLWTTSLGN

RTIGAPEYCHANFSKYFTARFWSLEKRYSLTFDERRPCYFNTGVMVIDLVKWRRVGYTKQIERWMEIQRNDRIYELGSLPPFLLVFAGNVAPIEHRWNQH

GLGGDNVRGSCRDLHPGPVSLLHWSGSGKPWNRIDSKRPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXRIKGTETTRNPAASNQEED

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At alias	At description	Locus	MR	r
AT3G62660	GATL7	galacturonosyltransferase-like...	Lus10010025 [exp]	0	1
AT3G62660	GATL7	galacturonosyltransferase-like...	Lus10000262 [exp]	1.0	0.9086
AT4G00110	GAE3	UDP-D-glucuronate 4-epimerase ...	Lus10015876 [exp]	3.9	0.8492
AT1G04520	PDLP2	plasmodesmata-located protein ...	Lus10014475 [exp]	5.5	0.8461
AT5G17770	CBR1, ATCBR	NADH:cytochrome B5 reductase 1...	Lus10026774 [exp]	6.2	0.8578
AT1G06730		pfkB-like carbohydrate kinase ...	Lus10024866 [exp]	8.1	0.8468
AT4G23820		Pectin lyase-like superfamily ...	Lus10023101 [exp]	9.5	0.8210
AT2G15290	ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...	Lus10019814 [exp]	9.8	0.8470
AT1G13380		Protein of unknown function (D...	Lus10041447 [exp]	12.7	0.7803
AT3G47850		unknown protein	Lus10042163 [exp]	13.4	0.8289
AT4G37660		Ribosomal protein L12/ ATP-dep...	Lus10000093 [exp]	13.8	0.8161

Lus10010025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10010025 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10010025 coexpression network