Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47485 74 / 2e-15 unknown protein AT3G62650 70 / 4e-14 unknown protein AT1G02700 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036328 [exp] 170 / 4e-51 AT2G47485 87 / 2e-22 unknown protein Lus10036329 [exp] 99 / 4e-22 AT1G02700 189 / 1e-57 unknown protein Lus10009156 [exp] 40 / 0.0008 AT2G47485 50 / 2e-08 unknown protein Lus10028487 [exp] 40 / 0.0009 AT2G47485 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200000 [exp] 91 / 2e-21 AT2G47485 106 / 3e-30 unknown protein Potri.014G124900 [exp] 70 / 4e-14 AT3G62650 77 / 2e-18 unknown protein Potri.017G119800 [exp] 45 / 2e-05 AT2G47485 66 / 2e-14 unknown protein Potri.004G095200 [exp] 44 / 3e-05 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 44 / 3e-05 AT2G47485 58 / 2e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010026 pacid=23176670 polypeptide=Lus10010026 locus=Lus10010026.g ID=Lus10010026.BGIv1.0 annot-version=v1.0 ATGAGCCAGACAACTCAAAGCGGGAAGCCAAAGAACCGGAACACCGGCCCGAATCCGAATCCGACCCGCTATCCCCACCCAAGCCACCTCATTCATCCTC CTCCAGGCTGGAATCCGTCGGGGTCCACAATCCAGCTCATCCTCAATCCCAACAAAAGCGTGGGTACACGTCAGCATCTCCAAACCCAACTGCGAACACG GAAGCCGGTGACGAGGGCGACTGATGGGACGGCGGACAGTGCGTACCCGGACGTGGTGAGTTGGAGGTCGGGGCAGGCGGTTGGGGCGGAGGAGACGATG GCGAGGGCGAGTAGGATGTTTTGGGAGAGTACTGAGATCTCTCCGTCGGGAGAGGAACCCAAAGCCTCACTTCTCAATCCCCATCCATCCACAATGAGAC CCTCGACTGGAATCTTCATCGCCATTGTAACTCTCTCTCTTCTGATCAATCTCCGCTTCACGACCTCATCATCGTCGGAGACTATGGCTGCCGTCTCGAA ACAACAACCATCATGCCAGTCGACGTGCTCCGCATGTGACAACCCATGTCAACCCTTGACATTACCTCCTCCGCCTCCACCACCGCTGCCGCCGTCTCCG CCGCCACCACAGTCTCTTCCTCCGCCGGCGACCCAGAACTGCCCGCCGCCCCCAACCGTGCCCGTCTACGTCTACCCGCCGCCGCCTTCCAATTGTCCGG GGGCGTGTAACCCGATACTTCCGTACTTTCCTTTCTACTATCAAAGCCCTCCAGCGGCTGCTAATTCTGCGGCGGATTTGGGGATGATGCGTTTCTTTGG CTTTCCGGCCGTCGGTACTATTTTGCTCTGCTCTCTCTGCCTTCTGGTTACCGCCGGAACGAGGAGGCGCCGGGTTTACCGCCGGATCGACGGTCCCCGG ATGCGGCGGGCGAAGCTCGGCGGTGGCGAAGGAGGACGACGCCGGTCGTGGCGGATCAAGATAAAGCCGAAGCTGAAGTTCCTGAACAAGGTGGGTTCGC CGAAGAAGCTGTTCATCTGGCTCAGGGACGCCTACGTCAGGATGATGGTCGGATTCGCTAACTCGGCCGGCGGCGGGATGGTCAGCGCGTCGAGCTACGG CGGTGCCTCGATTGGTGGCGACGGCGGTGCTGTGTTCGGGAGAAGGGTGGTGAGGGAGTACGACGAGAAGATGATAATCGAGATCTATAAGTCGCTGGTG ATGGCGCAGTCTAATCGGTTGGCGGCGGCGGAGAAGGAAGGTGCCGCCATCGCCGGTTCTGGTTCCTCCGTCGTCCAGCATAAACTTACCGCTATAGTGG AGTGA
AA sequence Show only first row Show all	>Lus10010026 pacid=23176670 polypeptide=Lus10010026 locus=Lus10010026.g ID=Lus10010026.BGIv1.0 annot-version=v1.0 MSQTTQSGKPKNRNTGPNPNPTRYPHPSHLIHPPPGWNPSGSTIQLILNPNKSVGTRQHLQTQLRTRKPVTRATDGTADSAYPDVVSWRSGQAVGAEETM ARASRMFWESTEISPSGEEPKASLLNPHPSTMRPSTGIFIAIVTLSLLINLRFTTSSSSETMAAVSKQQPSCQSTCSACDNPCQPLTLPPPPPPPLPPSP PPPQSLPPPATQNCPPPPTVPVYVYPPPPSNCPGACNPILPYFPFYYQSPPAAANSAADLGMMRFFGFPAVGTILLCSLCLLVTAGTRRRRVYRRIDGPR MRRAKLGGGEGGRRRSWRIKIKPKLKFLNKVGSPKKLFIWLRDAYVRMMVGFANSAGGGMVSASSYGGASIGGDGGAVFGRRVVREYDEKMIIEIYKSLV MAQSNRLAAAEKEGAAIAGSGSSVVQHKLTAIVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62650			unknown protein		Lus10010026 [exp]	0	1
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	1.4	0.8895
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030646 [exp]	3.7	0.8776
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	6.0	0.8712
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	6.9	0.8201
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10004835 [exp]	10.2	0.8357
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	12.0	0.8365
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	14.5	0.7699
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	14.5	0.8122
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	16.5	0.8067
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	16.7	0.8043

Compare expression of checked genes

Lus10010026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.