Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06720 834 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 825 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 775 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 758 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT1G09270 754 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT5G49310 625 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 581 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 394 / 2e-133 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 164 / 5e-48 ARM repeat superfamily protein (.1) AT5G03070 162 / 7e-44 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036330 [exp] 1003 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 867 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 867 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 850 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 817 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036452 [exp] 767 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 669 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 182 / 4e-51 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 180 / 3e-50 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010900 [exp] 879 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 874 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.008G214100 [exp] 865 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 860 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.002G199600 [exp] 856 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 856 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 801 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 176 / 1e-48 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.016G085200 [exp] 59 / 6e-09 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.006G132000 [exp] 57 / 4e-08 AT5G02880 1614 / 0.0 ubiquitin-protein ligase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10010028 pacid=23176696 polypeptide=Lus10010028 locus=Lus10010028.g ID=Lus10010028.BGIv1.0 annot-version=v1.0 ATGTCGTTGAGGCCGGGATCGAAGACGGAGGTGCGGCGTAACAGGTATAAAGTCGCTGTCGATGCGGAGGAAGGGAGGAGAAGGAGGGAGGATAATATGG TGGAGATCCGGAAGAACAAGCGTGAAGAGAGCTTGTTGAAGAAGCGGCGGGAAGGTTTTCAGTCTCAGCAGCTTCCGCAGTCTGCCTTAGAAACTCTTCC TGTGATGGTTGCAGCTGTTTGGTCTGATGACAGGAATGCACAACTAGATGCCACCACCGAGTTTAGGAAGTTGTTGTCAATCGAACGCAGCCCGCCAATC AATGAGGTTGTACAATCTGGTGTGGTTCCCCGTTTCGTTGAGTTTCTTGCAAGGGATGATTTTCCCCAGCTTCAGTTTGAGGCAGCATGGGCTTTGACAA ATATCGCTTCCGGGACTTCAGAAAACACAAAGGTTGTAATTGATCATGGGGCTGTGCCTATCTTTGTTAGACTCCTGGCTTCTCCTGCGGATGATGTTAG GGAACAGGCTGTTTGGGCTTTGGGTAATGTTGCTGGTGATTCTCCAAAATGCCGTGATCTTGTACTTGGAAATTCTGCATTGATGCCACTGCTTGCACAA TTCAATGACCAAGCTAAGCTCTCTATGTTGAGAAATGCAACTTGGACGCTATCAAATTTTTGCAGGGGCAAGCCACAGCCTTCATTTGATCAGACAAAGC CTGCTTTGCCTGTTCTTGAACGTCTTATTCATTCCAATGATGAGGAAGTTTTGACAGATGCCTGTTGGGCTCTATCCTACCTCTCGGACGGGACTAATGA CAAAATTCAAGCTGTTATTGAGATTGGGGTGTGCCCTCGACTTGTTGAGCTTCTAATGCATCCATCTCCAACAGTGCTCATTCCTGCTCTACGCACAGTT GGAAATATTGTGACTGGGGATGACATGCAAACTCAGTGCATGATTGACCATCAAGTGCTGCCCGTCCTTCTTAACCTGTTGAGCAATAATCATAAGAAAA GCATCAAGAAGGAAGCCTGCTGGACAATCTCCAACATCACTGCTGGAAATATTAAGCAGATACAGGCTGTAATTGAAGCTGGTATAATTGGTCCTCTCGT CCAATTACTCCTCACAGCGGAGTTTGATATAAAAAAGGAGGCTGCTTGGGCACTTTCAAATGCTACATCTGGTGGAACCCATGACCAGATCAAATTCCTG GTGAGCCAGGGTTGCATAAAGCCATTATGCGATCTCCTAGTTTGCCCCGACCCTAGAATCGTCACTGTCTGCTTGGAGGGACTGGAAAACATCCTCAAGG TCGGAGAAGCCGACAAGAACTTGGGTGTCTCCGGAAACATCAATGCTTTTGCTCAAATGATCGATGATGCTGAAGGAATAGACAAGATTGAGAATCTTCA GAGCCACGACAACAATGATATTTATGAGAAGGCAGTTAAGCTTCTGGAGACTTACTGGTTAGAGGAAGATGTTGATCCCATTGCTCCAGGTGACAATACT GCCCAAGCTGGATTCAACTTCGGGGGCAACGAACCTCCCGTTCCCTCCGGTGGATTCAACTTCTCTTAA
AA sequence Show only first row Show all	>Lus10010028 pacid=23176696 polypeptide=Lus10010028 locus=Lus10010028.g ID=Lus10010028.BGIv1.0 annot-version=v1.0 MSLRPGSKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLLKKRREGFQSQQLPQSALETLPVMVAAVWSDDRNAQLDATTEFRKLLSIERSPPI NEVVQSGVVPRFVEFLARDDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVRLLASPADDVREQAVWALGNVAGDSPKCRDLVLGNSALMPLLAQ FNDQAKLSMLRNATWTLSNFCRGKPQPSFDQTKPALPVLERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEIGVCPRLVELLMHPSPTVLIPALRTV GNIVTGDDMQTQCMIDHQVLPVLLNLLSNNHKKSIKKEACWTISNITAGNIKQIQAVIEAGIIGPLVQLLLTAEFDIKKEAAWALSNATSGGTHDQIKFL VSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEADKNLGVSGNINAFAQMIDDAEGIDKIENLQSHDNNDIYEKAVKLLETYWLEEDVDPIAPGDNT AQAGFNFGGNEPPVPSGGFNFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010028 [exp]	0	1
AT3G20290		ATEHD1	EPS15 homology domain 1 (.1.2)		Lus10043181 [exp]	10.8	0.5889
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	13.9	0.6261
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	21.8	0.5836
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	29.3	0.5728
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	40.1	0.5606
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	50.5	0.5143
AT2G32280			Protein of unknown function (D...		Lus10018495 [exp]	67.8	0.5055
AT4G00755			F-box family protein (.1.2)		Lus10041367 [exp]	73.2	0.4435

Compare expression of checked genes

Lus10010028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.