Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 435 / 5e-147 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 416 / 9e-140 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 365 / 8e-120 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G19940 269 / 5e-84 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 267 / 3e-83 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G23560 245 / 2e-75 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT2G32990 243 / 4e-74 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT4G09740 234 / 6e-71 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G02290 230 / 4e-69 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G64390 229 / 1e-67 ATGH9C2 glycosyl hydrolase 9C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036331 [exp] 835 / 0 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 452 / 9e-154 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10012162 [exp] 448 / 4e-152 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 395 / 3e-131 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10007584 [exp] 332 / 5e-110 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 325 / 2e-104 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 318 / 2e-101 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10034515 [exp] 263 / 1e-81 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10014265 [exp] 262 / 6e-81 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 442 / 7e-150 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 434 / 1e-146 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.010G177300 [exp] 397 / 2e-132 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.008G079500 [exp] 394 / 6e-131 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 322 / 5e-103 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G115400 [exp] 268 / 2e-83 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G237700 [exp] 264 / 4e-82 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 255 / 2e-78 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G356000 [exp] 251 / 5e-77 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.014G157600 [exp] 249 / 3e-76 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10010029 pacid=23176720 polypeptide=Lus10010029 locus=Lus10010029.g ID=Lus10010029.BGIv1.0 annot-version=v1.0 ATGTTAAGTGTGTTAAGTGCGACAGCTAGCTTTGCTTATTTGAACAATAAAATTGAATGGAACGAACTTTGTTTCTCTGGACGGCTTCCGAAAGGAAACA ACGTGACGTGGAGGGGCAACTCTTGCCTGAGCGACGAACCAGCCAGTGGCTACTACGACGCCGGCAGCGCGATCAAGTACAGTTTTCCTACATCTTTCGC GATGACGCTGCTGAGCTGGAGCGTGATAGAGTACCGTGACAAGTACGAAGTGATGGGGGAGCTTGACCACGTCAAGTCAGTTATAAAATGGGGCACTGAT TATCTCCTGAACACTTTCAACTCTTCCGCTCGTCGCATTGACCACATTATAGCTCAGGTCGGAGGTGACAAAGACAGCCACTGTTGGGTTCGACCGGAAG ACATACGCTACACCCGGCCGGCGACCAAGTGCTACACGTGTCCTGCCTTGGCTGCAGAAATGGCGGCTGCGTTAGCCTCTGCTTCCATAGTCTTCAAAGA CCAAGGAAATAAATACTCCAAATCACTCGTCCACGGAGCAGAAACTCTGTTCCGGTTCGCTACCGGAGATGAGGGACTGAAATACGCCGGCAGCCCCGAC CAGCCCTCCAAGTCCTACAATTCGTCAGGATTCTGGGACGAGGTAGTTTGGGGCGGTGCTTGGTTGTACTGCGCCACCGGCAACGTCTCCTATCTAAATC TCGTCACCTCCCCTGACCTGGCCGCAGAGAAAGGCAACAAACCGCACCCATTCTGGAGAGGACAAGACCGCCAAGTATTCAGCTGGAACAACAAACACCT GGGAGCTCAGCTACTCCTAACCAGGATAAGGATGTTCTTGTCCAGCTCCTATCCTTACGAAACCCTCCTATTAAAGTACCATCGTAACCTTGAAGAAACC ATCTGTTCGTACATGTCCTATACTCCATCCAACTTCAGAAGAACAAACGGAGGATTGATCCTACTTAACGGCGTCAAAACACCCAAGCCGATTCACTCCG CCGTCAACGCAGCCTTCTTGTCCGCATTGTATGGAGACTACTTGGCCACCGGGACCGCGTCCGGGTGGCAGTGCGGAGAAGGCCGGCCCGTCGAGGATCT TCGCACATTCGCGGCCAACCAGGTGAACTACATTCTAGGCAAGAATCCGAAAGGGATGAGCTATGTCGTTGGGTACGGGAAGAAGTTCCCGCGACACGTT CATCATAGGGGAGCTTCGATTGATCGTCATGGGGGCGGCAATGGTGTTAAGTATGGGTGCGAGGGAGGGCGGAAATGGAGGGACAGCCCGAAGCCGGACC CACACATTATTGTCGGGGCGATGGTGGGTGGTCCGTACGGTTTGAACGACAAGTTTAAGGATGTTCGAGCGAATTATAGCTACACGGAACCGAGTATCGT TGGGAATGCTGGTCTAGTTGCGTCGTTAGTGGCTTTGTCGTCATTGCCGGAGGGTCATCGGAGGTTTAGGAAGGTTGATGTGAATACTATGTTTTCTGCT GTGCCTCCTTTGTATAATCATTAA
AA sequence Show only first row Show all	>Lus10010029 pacid=23176720 polypeptide=Lus10010029 locus=Lus10010029.g ID=Lus10010029.BGIv1.0 annot-version=v1.0 MLSVLSATASFAYLNNKIEWNELCFSGRLPKGNNVTWRGNSCLSDEPASGYYDAGSAIKYSFPTSFAMTLLSWSVIEYRDKYEVMGELDHVKSVIKWGTD YLLNTFNSSARRIDHIIAQVGGDKDSHCWVRPEDIRYTRPATKCYTCPALAAEMAAALASASIVFKDQGNKYSKSLVHGAETLFRFATGDEGLKYAGSPD QPSKSYNSSGFWDEVVWGGAWLYCATGNVSYLNLVTSPDLAAEKGNKPHPFWRGQDRQVFSWNNKHLGAQLLLTRIRMFLSSSYPYETLLLKYHRNLEET ICSYMSYTPSNFRRTNGGLILLNGVKTPKPIHSAVNAAFLSALYGDYLATGTASGWQCGEGRPVEDLRTFAANQVNYILGKNPKGMSYVVGYGKKFPRHV HHRGASIDRHGGGNGVKYGCEGGRKWRDSPKPDPHIIVGAMVGGPYGLNDKFKDVRANYSYTEPSIVGNAGLVASLVALSSLPEGHRRFRKVDVNTMFSA VPPLYNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10010029 [exp]	0	1
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	15.1	0.8074
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	30.3	0.7938
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	31.5	0.7741
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	35.6	0.7861
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10040944 [exp]	52.0	0.7123
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	57.5	0.7604
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10013413 [exp]	60.3	0.7569
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	69.6	0.7695
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	82.8	0.7568
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	88.9	0.7414

Compare expression of checked genes

Lus10010029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.