Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 432 / 6e-149 Protein of unknown function (DUF1624) AT5G27730 404 / 2e-137 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036333 [exp] 454 / 1e-159 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10020653 [exp] 384 / 1e-129 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 373 / 5e-125 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10039223 [exp] 368 / 2e-124 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10022615 [exp] 368 / 4e-123 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10027468 [exp] 357 / 4e-120 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10019798 [exp] 311 / 3e-102 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 247 / 5e-77 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 191 / 2e-58 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G123800 [exp] 661 / 0 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 453 / 4e-157 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 446 / 3e-154 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 414 / 5e-141 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 410 / 8e-140 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.004G176400 [exp] 405 / 8e-139 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 402 / 1e-137 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.005G025200 [exp] 365 / 4e-122 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010030 pacid=23176717 polypeptide=Lus10010030 locus=Lus10010030.g ID=Lus10010030.BGIv1.0 annot-version=v1.0 ATGCCGATCATCTCTGTCCAGGAAGCCGATCAGCGGGAACCACTTCTACCGCCGTCCTCTGGAGATAACCAGCTCACTGCTACTTCGCCACCCACCGTCC AGCAACCGCCGCAGCGGAATAGTCAACGCCTCGTCTCGCTCGACGTCTTCCGTGGTCTCACCGTTGCCTTGATGATATTAGTTGACGACGCTGGAGGAGC GTTCCCGTCGATTAACCACTCTCCGTGGTTTGGAGTCACGCTGGCCGACTTTGTGATGCCGTTTTTCCTGTTCGGCGTAGGAGTTTCGATTGGTTTAGTG TTCAAGAGAGTACCAAACAAAGTAGAGGCAACGAAGAAAGTTGTTCTAAGAACAATTAAGCTGTTTGTTCTTGGAGTGTTGCTGCAAGGAGGATATTTCC ATGGTCGTCATGATCTAACATACGGAGTCGATGTGGGCAAGATACGGTGGCTAGGTGTGCTGCAGAGAATATCTATAGGTTATCTGTTTGCATCACTGTC AGAGATTTGGCTCGTGGATAGTCGTGTGGTCACCTCAGTGATGACTTTTGTGAAGAAATATTATGTTCAATGGATGGTGGCGTTCACCATATGTGCTATC TACATGTGCTTGCTGTATGGCCTCTTTGTTCCTGATTGGAGATTCGAGCTTCAAAGTGTAAATTCTTCAGGCAATGGATCATATACTCAAACGGTGCATT GTGGAGTAAGGGGCAGTCTTGATCCTCCTTGTAATGCAGTTGGCTTCGTTGATCGAGTTTTCTTTGGGTTAGAACACCTTTATCAGCATCCTGTGTACAC AAGGACAGAGCAATGCAGCGTTAATTCTCCCGACTATGGGCCTCTGCCACCAAATGCTCCTAACTGGTGCCGTGCGCCATTTGACCCTGAAGGCACTCTG AGCTCCTTGATGGCTACTATTACGTGCTTCGTAGGATTGCATTTTGGACATATTCTTCTTCATGTTAAGGACAATATGCAGAGGCTGGTTTTTTGGACGG TAACTTCTTCATCTCTACTCATTGCTGGATATGTTCTGGTGTTACTTGGCATTCCACTTTCCAAGCCATTGTATACCCTGAGCTATACTTTCGTCACGGC TGGGGCATCCGGCTTAACACTAGCCTTCATCTTTTATATGGTTGATGTCAAACAATTTCGAAAGCCAGGATTGACAATGCAGTGGATGGGTATGAATGCA CTCATTGTATACTCTTTAGCTGCGTGCGAGATTTTTCCAGCTGTCCTGCAAGGCTTCTACTTGTTTTCACCTGAAAACAACTTGGTAGATGGCACAGAAT GGGTATTGCAGAAGGTCCTCCACTCGGAGAAATGGGGAACTCTTGCATTTGTGATGGTGGAGATCCTGTTTTGGAGTTTGTTTTCTGACTTCTTACACCT TAAAGGCATTTATTTGAAGTTGTAA
AA sequence Show only first row Show all	>Lus10010030 pacid=23176717 polypeptide=Lus10010030 locus=Lus10010030.g ID=Lus10010030.BGIv1.0 annot-version=v1.0 MPIISVQEADQREPLLPPSSGDNQLTATSPPTVQQPPQRNSQRLVSLDVFRGLTVALMILVDDAGGAFPSINHSPWFGVTLADFVMPFFLFGVGVSIGLV FKRVPNKVEATKKVVLRTIKLFVLGVLLQGGYFHGRHDLTYGVDVGKIRWLGVLQRISIGYLFASLSEIWLVDSRVVTSVMTFVKKYYVQWMVAFTICAI YMCLLYGLFVPDWRFELQSVNSSGNGSYTQTVHCGVRGSLDPPCNAVGFVDRVFFGLEHLYQHPVYTRTEQCSVNSPDYGPLPPNAPNWCRAPFDPEGTL SSLMATITCFVGLHFGHILLHVKDNMQRLVFWTVTSSSLLIAGYVLVLLGIPLSKPLYTLSYTFVTAGASGLTLAFIFYMVDVKQFRKPGLTMQWMGMNA LIVYSLAACEIFPAVLQGFYLFSPENNLVDGTEWVLQKVLHSEKWGTLAFVMVEILFWSLFSDFLHLKGIYLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	0	1
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	4.4	0.9566
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	6.5	0.9268
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	7.5	0.9532
AT5G49710			unknown protein		Lus10015965 [exp]	9.5	0.9450
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	10.6	0.9346
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	13.2	0.9388
AT1G44770			unknown protein		Lus10034500 [exp]	13.3	0.9421
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	14.0	0.9234
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	15.4	0.9191
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	17.7	0.9240

Compare expression of checked genes

Lus10010030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.