Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02660 585 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G62590 478 / 1e-160 alpha/beta-Hydrolases superfamily protein (.1) AT3G61680 389 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 49 / 8e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 48 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G42450 48 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 45 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036334 [exp] 1077 / 0 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10009811 [exp] 382 / 4e-123 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040915 [exp] 305 / 2e-95 AT3G61680 415 / 1e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 44 / 0.0004 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 44 / 0.0005 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197900 [exp] 650 / 0 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G169600 [exp] 366 / 2e-116 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G097200 [exp] 365 / 3e-116 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G290600 [exp] 47 / 6e-05 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.014G027800 [exp] 45 / 0.0002 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 44 / 0.0003 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G005256 [exp] 43 / 0.0008 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.010G019500 [exp] 42 / 0.0008 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10010031 pacid=23176684 polypeptide=Lus10010031 locus=Lus10010031.g ID=Lus10010031.BGIv1.0 annot-version=v1.0 ATGGACGGATTGCGCTTGAACACGGGGATCCACGGAGTTGCGCCGTCGATCTCAGTCGCCGGATCCGTAGGATTAGATTTCCGGCCCAACGCGACTTATC TGAGCAGGGATCGTAAATCTACATCTGCGGCGGCTTCTTCCTCTTGTTCTTCGTCGTCTCCGCCGCCGTCCAGGTTCTCTTTCCGGTACCCGCTGCAGTC GTGGTGGCCTGGTCAGAGGTGCAGCAGCAGGCTAAACGCGGTGGTAGACACCGGAGGCGACGAATCCGTCCTCGTCGATAATGTCGAGGCTGGAAACGAC GGGACGGTGGAAGTGCGGGATCAGAATTGGGTGATGAAGATTTTGCACGTTAGGTCTCTTTGGAAGGACGAAGGATCAGATTCGAAGTCTGAAGAGGCTG ACGTCGAGGAGAAATCCGATGATGAAGAAGTGGATGGTGAGGTGTGCTGTGTTGCGGAGAATGAAGAAGACGAGATTGAATTCGACAGGGACTCGTTCTC CAGATTGCTGAGGAATGCATCACTGGCTGAGGCCAAGTTGTATGCTCAGATGTCGTATTTGGGTAACTTGGCTTACTGTATTCCTAAGATCAAGCCAGGG AATCTGATGAAATATGGAGCGTTGAGGCTAGTAACATCATCTGTTGAGAAGCGAGAGCTAGCCAAGAAAGCTCATATACCAGCTGAATCCCAGGAGCAAC AAGAACAACCAAAAGAGATTCTAAAGGAGGAACCAGAAAAGAGCGACGGCCAGAAGAATCAAATAAACGCCTCTACTGCTTATCAAATAGCCGCCTCTGC TGCTTCCTATTTACACTCCCAAGCAAAATGCATCCTTCCTTTCGATTCCTCAAAGGTCGAAGATTCGACAGACGACGCTGCCGCTAAGAAGGATTCCCAG GCTTCTCTTATGGCGACTACCAACTCGGTCACAGCTGTGGTTGCTGCCAACGAAGAAGTGAAACAAGCTGTTGCAGATGATTTGAGGTCAACTTGCTCCT CCCCTTGTGAGTGGTTCATATGTGACGATGATCAGCGTACAAGATACATCGTGATTCAGGGATCTGAGTCACTGGAATCTTGGCAAGCGAATCTTCTATT CGAGCCTATCGAGTTTGAAGGATTAGGTGTGCCTGTTCATAGAGGAATCTATGAAGCTGCTAAAGGAATCTACGAGCAAATGCTGCCCGAAATCCGAGCC CACTTAAAATCATATGGCAGGCGAGCAACCTTCCGCTTCACCGGCCATTCCCTAGGTGGAAGCTTGTCAGTGCTCATAAACCTAATGCTGCTTGTTAGAG ATGAAGTGCCAGCTTCCTCTTTGCTTCCGGTTATAACATTTGGTTCGCCATCCATCATGTGTGGTGGAGACCAGCTGCTTCGTAAGCTAGGCCTGTCACG GAATCATGTACAGGCGATCACAATGCACCGAGACATCGTGCCCCGGGCTTTCTCCTGCAGTTACCCTAGCCATGTTGCTGAGCTTTTGAAAGCTGTGAAT TCGAACTTCCGGAGCCATCAGTGTCTCAATAATCAGAGCATCTTATACGCACCAATGGGAGAGCTTGTGATACTACAGCCGGACTCGAAATTCTCGCCTC AGCACGATCTCTTACCATCGGGTAGCGGTCTGTTCTTCCTCACCTGCAGCGACGATGATAATGCAGAGAAGTTGCTTCGAGCTGCACAATCGACATTCAT GAACTCGCCACACCCGCTCGAGATTCTAAGCGACCGCTCCGCTTACGGCTCCGAGGGTGCCATCCAAAGGGACCACGACATGCACTCCTACTTGAAATCG GTACGAAACGTGATACGCCTGGAGATGAACCGCATCAGGAAGGCCAGACGAGAGCACCGGCGGAAGTTCTGGTGGTCGAGGTTGGCGATGACCGATGTGT TCGTCGTCGGGAGGGGTTCGCCGACGTTGAGCAGGACCGGGTCGGTTCGGATGAACTTTTCAGGTGCGATACAGACTGGAAGAGAGTCGATTAAGAGGTT TAGTAGAATGGTGGCTTCCCAGCACATGCATTTGTTCGTTGTGCTGTTGCTCCCTGCACGTTTGATTCTCTTAGGTGTATACAACGTGATCGGTTCCCAT TAA
AA sequence Show only first row Show all	>Lus10010031 pacid=23176684 polypeptide=Lus10010031 locus=Lus10010031.g ID=Lus10010031.BGIv1.0 annot-version=v1.0 MDGLRLNTGIHGVAPSISVAGSVGLDFRPNATYLSRDRKSTSAAASSSCSSSSPPPSRFSFRYPLQSWWPGQRCSSRLNAVVDTGGDESVLVDNVEAGND GTVEVRDQNWVMKILHVRSLWKDEGSDSKSEEADVEEKSDDEEVDGEVCCVAENEEDEIEFDRDSFSRLLRNASLAEAKLYAQMSYLGNLAYCIPKIKPG NLMKYGALRLVTSSVEKRELAKKAHIPAESQEQQEQPKEILKEEPEKSDGQKNQINASTAYQIAASAASYLHSQAKCILPFDSSKVEDSTDDAAAKKDSQ ASLMATTNSVTAVVAANEEVKQAVADDLRSTCSSPCEWFICDDDQRTRYIVIQGSESLESWQANLLFEPIEFEGLGVPVHRGIYEAAKGIYEQMLPEIRA HLKSYGRRATFRFTGHSLGGSLSVLINLMLLVRDEVPASSLLPVITFGSPSIMCGGDQLLRKLGLSRNHVQAITMHRDIVPRAFSCSYPSHVAELLKAVN SNFRSHQCLNNQSILYAPMGELVILQPDSKFSPQHDLLPSGSGLFFLTCSDDDNAEKLLRAAQSTFMNSPHPLEILSDRSAYGSEGAIQRDHDMHSYLKS VRNVIRLEMNRIRKARREHRRKFWWSRLAMTDVFVVGRGSPTLSRTGSVRMNFSGAIQTGRESIKRFSRMVASQHMHLFVVLLLPARLILLGVYNVIGSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10010031 [exp]	0	1
AT1G02660			alpha/beta-Hydrolases superfam...		Lus10036334 [exp]	3.3	0.8680
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	3.9	0.9203
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10037644 [exp]	4.9	0.8857
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	7.5	0.8849
					Lus10036703 [exp]	7.5	0.8974
AT1G72100			late embryogenesis abundant do...		Lus10000723 [exp]	8.1	0.8880
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	8.2	0.9111
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	8.5	0.8197
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	10.4	0.9001
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10036582 [exp]	10.8	0.8134

Compare expression of checked genes

Lus10010031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.