Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 642 / 0 DA1 DA1 (.1) AT4G36860 560 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 479 / 7e-166 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66610 338 / 2e-110 DAR7 DA1-related protein 7 (.1.2) AT5G66620 338 / 2e-109 DAR6 DA1-related protein 6 (.1) AT5G17890 310 / 1e-93 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66630 298 / 1e-93 DAR5 DA1-related protein 5 (.1) AT5G66640 280 / 2e-89 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016298 [exp] 915 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10032736 [exp] 763 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10018789 [exp] 714 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10022486 [exp] 588 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 576 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 480 / 2e-163 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 393 / 3e-132 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 282 / 3e-94 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132700 [exp] 734 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 731 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 592 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 587 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 568 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 486 / 5e-169 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 181 / 4e-53 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 94 / 4e-23 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10010033 pacid=23155617 polypeptide=Lus10010033 locus=Lus10010033.g ID=Lus10010033.BGIv1.0 annot-version=v1.0 ATGGGTTGGCTTAGCAAGATCTTCAAAGGGTCCAACCATAGCATTTCTGAAGGCCATTATCATGACAATGATGAAGTAACTCATGAGCTTCATTCACCGT CTCCATCCGGGGATGTCTCGTCGTACCAGGATGATGAAGAGATAGATCGTGCTATTGCTCTATCGCTTTTAGAGGAGAGTCAACAGGGGAAACATGTGAT TGATACTGAGTCTCAATTACAAGAAGATGAACAGCTTGCTAGAGCCCTACAAGAAAGCTTGAGCGTGGATGCTCCCCCTAACCCACCCCCTCCCCCGCAA TATAAACATCCACATGCACATCCAGGAAATGTATATCAACCAGTTCCAGTACATTTCTCGATGGGTTTCAGAATATGTGCTGGTTGTAGTAATGAGATCG GTGCTGGAAGATTTCTACATTGTCTCAATGCGTACTGGCATCCAGAATGTTTCCGCTGCCATGTCTGCAACATACCTATTTCTGATTATGAGTTCTCCAT GTCTGGCAATTACCCCTATCACAAAACATGCTACAAGGAGCAGTACCATCCCAAATGTGATGTTTGCAAGCACTTTATTCCAACCAACCATGCTGGACTT ATTGAGTATAGAGCACATCCTTTTTGGAACCAGAAATATTGCCCTACTCATGAACATGACAGTACCCCACGATGCTGCAGCTGTGAGAGAATGGAGCCTC AAGATACAGGATATGTTCCACTTAATGATGGTCGAAAGCTATGTTTGGAGTGCCTGGATTCAGCAGTCATGGATACCAATCAATGCCAACCACTTTATGA TGACATACAGCTATTTTATGAAAGTTTAGACATGAAGGTGAAGCAGTATGTTCCCTTACTTCTTGTCGAGAGACAAGCACTAAATGAAGCCAGAGAGGGA GAAAAGAACGGTCATTATCACATGCCAGAAACCAGAGGCCTCTGCCTTTCTGAGGAGCAAACAATCAGCACAGTACGGAGACCAAAATCTGGTGGACACC GATCCATGGACATGATAACGGAGCCTTACAAACTCACACGGAGATGTGATGTCACCGCCATTCTCATATTGTATGGTCTCCCAAGATTACTTACCGGATC TATCCTAGCTCACGAGATGATGCACGCATGGATGCGACTTAATGGTTTCCAACCTCTAAGTCAAGACATTGAAGAGGGCATTTGCCAGGTGCTTGCACAC ATGTGGTTAGATTCGCAGCTGAGCTTTGAAACATCATCTTCGTCAGCTGGTTCAAGAAACAGTTCAAGGCCGCCCTTTGAGAAAAAGCTAGGAGCTTTCT TCAAGCATCAGATTGAGTCAGACAGTTCTCCAGTGTATGGAGATGGGTTCAGAGCCGGTCAGCAAGCAATACGTAAATATGGGCTTCAAAGAACTCTTGA ACATATCCGAATGACTGGGAGGTTCCCTTTCTGA
AA sequence Show only first row Show all	>Lus10010033 pacid=23155617 polypeptide=Lus10010033 locus=Lus10010033.g ID=Lus10010033.BGIv1.0 annot-version=v1.0 MGWLSKIFKGSNHSISEGHYHDNDEVTHELHSPSPSGDVSSYQDDEEIDRAIALSLLEESQQGKHVIDTESQLQEDEQLARALQESLSVDAPPNPPPPPQ YKHPHAHPGNVYQPVPVHFSMGFRICAGCSNEIGAGRFLHCLNAYWHPECFRCHVCNIPISDYEFSMSGNYPYHKTCYKEQYHPKCDVCKHFIPTNHAGL IEYRAHPFWNQKYCPTHEHDSTPRCCSCERMEPQDTGYVPLNDGRKLCLECLDSAVMDTNQCQPLYDDIQLFYESLDMKVKQYVPLLLVERQALNEAREG EKNGHYHMPETRGLCLSEEQTISTVRRPKSGGHRSMDMITEPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWMRLNGFQPLSQDIEEGICQVLAH MWLDSQLSFETSSSSAGSRNSSRPPFEKKLGAFFKHQIESDSSPVYGDGFRAGQQAIRKYGLQRTLEHIRMTGRFPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19270		DA1	DA1 (.1)		Lus10010033 [exp]	0	1
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	2.8	0.8049
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	12.2	0.7953
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	17.3	0.8012
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	18.4	0.7988
					Lus10002136 [exp]	22.4	0.7841
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	28.1	0.7621
AT2G20210			RNI-like superfamily protein (...		Lus10011909 [exp]	29.9	0.7940
					Lus10008068 [exp]	29.9	0.7305
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	31.6	0.7431
AT5G36930			Disease resistance protein (TI...		Lus10012311 [exp]	37.1	0.7544

Compare expression of checked genes

Lus10010033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.