Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 582 / 0 MATE efflux family protein (.1) AT1G12950 451 / 2e-155 RSH2 root hair specific 2 (.1) AT3G26590 451 / 2e-155 MATE efflux family protein (.1) AT5G38030 444 / 8e-153 MATE efflux family protein (.1) AT1G23300 427 / 4e-146 MATE efflux family protein (.1) AT4G00350 410 / 8e-139 MATE efflux family protein (.1) AT4G25640 399 / 3e-135 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 364 / 2e-121 MATE efflux family protein (.1) AT1G33110 360 / 6e-120 MATE efflux family protein (.1.2) AT5G65380 358 / 1e-119 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042130 [exp] 676 / 0 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10016296 [exp] 524 / 0 AT1G47530 423 / 4e-145 MATE efflux family protein (.1) Lus10036854 [exp] 456 / 5e-157 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 454 / 2e-156 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 434 / 7e-149 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 428 / 2e-146 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 422 / 2e-144 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 422 / 3e-144 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10042344 [exp] 421 / 9e-144 AT1G47530 521 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 478 / 7e-166 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 461 / 2e-159 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 402 / 4e-136 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 397 / 4e-134 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.007G010200 [exp] 388 / 6e-131 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 378 / 3e-128 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 380 / 6e-128 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102100 [exp] 371 / 3e-124 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 365 / 5e-122 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 364 / 2e-121 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10010035 pacid=23155623 polypeptide=Lus10010035 locus=Lus10010035.g ID=Lus10010035.BGIv1.0 annot-version=v1.0 ATGGAGGCACCACTACTCCAATCCGGCGGGAAGAAATTGGAATCCTTGGCTGAGTTTGGAAAAGAGTCAAGGACGGTATGGAAGATTGCTGGGCCAGCGA TATTCACCTCCATTGCACAATACTCCCTAGGCGCCTTGACGCAGACTTTCACCGGGCGTGTGGGTGAGCTGGAGCTGGCCGCTGTCTCGGTAGAGAACTC AGTCATCGCCGGCCTTGCCTTCGGTGTCATGTTGGGTATGGGCAGTGCATTGGAAACGGTGTGCGGGCAAACGTATGGAGCAGGGCAGATAAGGATGTTG GGGATATACATGCAGAGATCATGGCTTATTCTTTTAGCCACCGCTTGGTTATTGGTCCCTCTTTATGTCTTCTCTCCTACTATCCTCATCTTCCTCGGGC AAACCTCTTACATCTCTCATGCTGCAGGGGAATTCGCAATCTGGATGCTACCGCAGTTATTTGCATATGCCATCAACTTCCCAATACAGAAGTTCCTTCA AGCGCAGGGCAAAGTTAAAGTGATGGCCTCTATATCCGCTATGGTGTTGCTTTTCCATGTCTTCTTCAGTTGGTTGCTCATCCTCAAACTTGAGTGGGGT TTAGTCGGAGCCGCCATTGTACTCAATGCTTCCTGGTGGATCATAATCATTGCCCAACTAGCTTACATATTCATCACCGACTCGGATGGCGCATGGACTG GCTTCTCTTGGCTTGCTTTCACCGACCTCTGGGGATTCTTCAACCTCTCCCTTGCCTCTGCCGTTATGCTCTGCTTGGAGTTTTGGTACTTGATGGTATT GGTGGTTATAACGGGTCGGTTGTCCGACCCGCTTATTCCCGTGGACGCCATCTCAATCTGCATGAACCTAAACGGATGGGAGGCCATGATTGCACTTGGA TTTAATGCGGCCATAAGTGTAAGGGTCTCGAATGAGCTTGGAAAAGGAAATGCTGGTGCTGCTAAACTATCTGTAATAGTGGTATCGGCTACATCATCTG TGATAGGAGTTCTGTGTATGGTACTGATTTTCACAACAAGAGGTTCCTTCCCTCAACTCTTTACTAGCAGTGCTGCTGTTGCTGAGGAAACTAGGAGACT TTCTACCTTGTTGGCATTTACTTTCCTTCTCAACAGCCTTCAACCTGTTTTATCTGGTGTTGCTATTGGAGCTGGATGGCAGTCACTGGTGGCTTATATT AACATAGGATGTTATTATTTAGTTGGATTGCCTACAGGGATTCTCCTAGGTTTCACTTTTGGCTTTGGAGTTGAGGGTTTATGGTCAGGAATGATTGTGG GAATTGTTCTACAAACCATAATTCTCTTGGTTATAACTGCAATAACTGATTGGGATTCTGAAGTGGAAAAGGCTGAGGGGCGGGTTAAGAGATGGGGAGG ATCATCAGATCATCATTAG
AA sequence Show only first row Show all	>Lus10010035 pacid=23155623 polypeptide=Lus10010035 locus=Lus10010035.g ID=Lus10010035.BGIv1.0 annot-version=v1.0 MEAPLLQSGGKKLESLAEFGKESRTVWKIAGPAIFTSIAQYSLGALTQTFTGRVGELELAAVSVENSVIAGLAFGVMLGMGSALETVCGQTYGAGQIRML GIYMQRSWLILLATAWLLVPLYVFSPTILIFLGQTSYISHAAGEFAIWMLPQLFAYAINFPIQKFLQAQGKVKVMASISAMVLLFHVFFSWLLILKLEWG LVGAAIVLNASWWIIIIAQLAYIFITDSDGAWTGFSWLAFTDLWGFFNLSLASAVMLCLEFWYLMVLVVITGRLSDPLIPVDAISICMNLNGWEAMIALG FNAAISVRVSNELGKGNAGAAKLSVIVVSATSSVIGVLCMVLIFTTRGSFPQLFTSSAAVAEETRRLSTLLAFTFLLNSLQPVLSGVAIGAGWQSLVAYI NIGCYYLVGLPTGILLGFTFGFGVEGLWSGMIVGIVLQTIILLVITAITDWDSEVEKAEGRVKRWGGSSDHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10010035 [exp]	0	1
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	10.0	0.7348
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	11.0	0.6987
AT4G36980			unknown protein		Lus10019346 [exp]	15.4	0.7106
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	16.2	0.7060
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002604 [exp]	17.4	0.6856
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	22.2	0.6641
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	23.2	0.6858
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	27.7	0.6712
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	29.4	0.6505
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	38.5	0.6922

Compare expression of checked genes

Lus10010035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.