Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42940 197 / 3e-54 RING/U-box superfamily protein (.1) AT1G45180 188 / 2e-51 RING/U-box superfamily protein (.1) AT2G15530 74 / 1e-13 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 65 / 9e-11 RING/U-box superfamily protein (.1) AT1G53190 44 / 0.0003 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010372 [exp] 905 / 0 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10024810 [exp] 716 / 0 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10018725 [exp] 563 / 0 AT5G42940 170 / 1e-45 RING/U-box superfamily protein (.1) Lus10018724 [exp] 52 / 2e-07 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124300 [exp] 550 / 0 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 205 / 4e-57 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 202 / 9e-56 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 61 / 2e-09 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 49 / 1e-05 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010036 pacid=23155633 polypeptide=Lus10010036 locus=Lus10010036.g ID=Lus10010036.BGIv1.0 annot-version=v1.0 ATGCAAGGGCAAAGGGGTATATTGGGTTCTTTGCCAGAGACTTTGGACTTTGAACATGGATCTCCATCGGCTAACCCTATCATGGACCAGCAACTTCGCT GGAACAACCTGCGAAATCCTGCAGATGAGCGATTGTCAAACTTCATGGTGTCTCCGGTTCACATGAATGCATATGCAAATCCGATCAATCATGAACGCCA GAACTTGAGTCGGTGGAGCCTAGGTGAACCAAGTTCCAGTACTGGAAGAGGCGAAAGAAGTCGGGATAAGCAAAAGATGGAATATGGGTCATCATCTTCA GGGAACATGTCAGCTGATGGTAGTTCAAGGTTAGAAGGAAGGTGTAACGAACCAACACATATTCTTTCCTTGAATACTGCCAATGTCAATGACCAGTTTG TGCAGAGCTCCAATGCCAATGGATTTCCCCACAATTTGAACTTGAATGCTGGATTGGTGGGCCAAGGTGCGGATGGATGTCCAGCGATGGGAGGCCGAAC TATATACAAGTCTGGTGGAGCTGAACATGGGGATGCTGTTCCTGTTAGTGGGGCTGAAGATTTCCTTCTCCGGTCTGGAAGTGGTGGATACTTGGTGGAA GATGATGGTAGACCTGGTCTTTCATTGGACGGGCGTCGTCAATCATGCAAAAGGAAAGCTGTGGAAGGACAAGGGCAGTCGTCTATGACTGCAAGTTCTA GTTTGTTTCAGCATCCAGAGGGTAGTGCATGGCCAGTTGTTCCAACCCGTGAGGTTCGCAGCAGTTTGAGTATGTCAGCTGCACCAGAGCAGGTGAATCC CAGACATGGACTAGGCGTGAGAGGACTAGGTACTGAAGGTATTGGAGGCCCGATGGTACCTAGAAGCTCTCAAAGAAATTTCCGTTTAAGGATAAATCCT TCACATCAAGAATCTGTCCCCTCTTCAGTATTTTCTTCTGGGAATGCAGTGAGACATCACAATTTGCAAACTTCCCATCACTCATCAAGACCTATTCCAG TTGATCATTCCTTGGAGTTTAGGTCATCAGCTGCTTCAGAGGCTGTAATTCCTCAAGTTCAGGCAGCTGCTGTCCCTGGTCCAGTTTTACCACAAAATGC TGCACAATATAGGTGGAACGATAGCTCTAGCTCAAGATCTGGTAGCTCATCGGGTTCTGTGGACTTGAGTGATAGGGAGGGAGGAAGCTCAAGTAGCAGT GCTAGACATATATGGGAACATCCTATGTTTGTACCTGCAACAGAGTTGAGAACCTCTGCCAGAAATCCAGCAAATAGGAACACAGTTGCAGGAAATGTGA GCATTCCTAGCAGTGCTTCTTCTGCATCTCAAAATGTCTCGGGTTCAGGTGTTCATTTGTCAGCTCCGACTTGGGTTCCTCATCAAAACCCTTCTAGAAA CTCAAGGAGACTGGCAGAGTATGTTCGCCGATCATTGTTTTCTTCTGCGCCTGGCGACACTGGTACTCAGAGCAGTAATCATCCTTCTGCCGAAGAGATG GTTTTTCCGTCTGGGACTAGTAACCAGGGGCATCATCGATCACATCCGAGATCAGCTCCTTGGATAGAGAGACAGGGTGATGGGGTACTTAGAATTCCTT ACCCGTTACGGACTCTTAGCGCCACCAGTGAAGGTCGAAGCAGGCTTGTTTCTGAGCAGATACGCAATGTCTTGGATCTCATGCGTAGGGGTGAGGGTTT GCGACTTGAGGAATTACTTGCTTTGGAAGAAACCATCGGTACAGTCAATACTGGATTGAGCGAAGAAACCATATTAGATAGGCTCAAACAACGCAAATAT TGTGCTTCAGTCGGAACAACCGAGGTGGAGACAGAGCCATGCTGCGTTTGCCAGGTAAAAGAGGAAAACCCATCTTGTTACTTCACCTTTCCGACTTACT TGATATGA
AA sequence Show only first row Show all	>Lus10010036 pacid=23155633 polypeptide=Lus10010036 locus=Lus10010036.g ID=Lus10010036.BGIv1.0 annot-version=v1.0 MQGQRGILGSLPETLDFEHGSPSANPIMDQQLRWNNLRNPADERLSNFMVSPVHMNAYANPINHERQNLSRWSLGEPSSSTGRGERSRDKQKMEYGSSSS GNMSADGSSRLEGRCNEPTHILSLNTANVNDQFVQSSNANGFPHNLNLNAGLVGQGADGCPAMGGRTIYKSGGAEHGDAVPVSGAEDFLLRSGSGGYLVE DDGRPGLSLDGRRQSCKRKAVEGQGQSSMTASSSLFQHPEGSAWPVVPTREVRSSLSMSAAPEQVNPRHGLGVRGLGTEGIGGPMVPRSSQRNFRLRINP SHQESVPSSVFSSGNAVRHHNLQTSHHSSRPIPVDHSLEFRSSAASEAVIPQVQAAAVPGPVLPQNAAQYRWNDSSSSRSGSSSGSVDLSDREGGSSSSS ARHIWEHPMFVPATELRTSARNPANRNTVAGNVSIPSSASSASQNVSGSGVHLSAPTWVPHQNPSRNSRRLAEYVRRSLFSSAPGDTGTQSSNHPSAEEM VFPSGTSNQGHHRSHPRSAPWIERQGDGVLRIPYPLRTLSATSEGRSRLVSEQIRNVLDLMRRGEGLRLEELLALEETIGTVNTGLSEETILDRLKQRKY CASVGTTEVETEPCCVCQVKEENPSCYFTFPTYLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	0	1
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	1.0	0.9322
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	2.4	0.8903
AT4G24100			Protein kinase superfamily pro...		Lus10033230 [exp]	4.2	0.8835
AT4G24100			Protein kinase superfamily pro...		Lus10000878 [exp]	5.3	0.8866
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	6.6	0.8780
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	8.0	0.8810
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	10.1	0.8973
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	11.5	0.8819
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	11.6	0.8610
AT4G11800			Calcineurin-like metallo-phosp...		Lus10042668 [exp]	16.5	0.8567

Compare expression of checked genes

Lus10010036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.