Plant FIBer expression Database

Lus10010039 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012473
[exp]
363 / 3e-127 AT1G77020 61 / 2e-10 DNAJ heat shock N-terminal domain-containing protein (.1)
Lus10030143
[exp]
61 / 3e-10 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Lus10021752
[exp]
52 / 3e-08 ND /
Lus10024467
[exp]
47 / 2e-06 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G019466
[exp]
49 / 3e-06 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence
>Lus10010039 pacid=23155636 polypeptide=Lus10010039 locus=Lus10010039.g ID=Lus10010039.BGIv1.0 annot-version=v1.0
ATGGCGGCTTCTTCTGATTTGTCTGGTGAAGCTGACATTCCGGATAAGCTCCATGGAAAACTCAAGGTGATTTGTAAGATGGCCAACAACAATGGAAAAG
CTAAGCTAGGTTTATCGGGAAATTCGGCGAAATACAAATTCGAAAGTAAGAAACAGAGGAATACCACACCTATAGTGAACTTGGTGTCTGATTCGGAATT
ATCTGATGGCGAATTTAAGGTGACCTTCGAAGATATCAGAAAGAAGGTATCGTGTTACATATTTGACCGAGAACTCCCCATGGATGAAGTTTTGATCCAA
CACGATGGGTTAAAATGTGATCGCATTGCGCTTTGGACGTTGATCTCTTATACATGGTTGGATACAAAGGTGATAACATGTGTTGCTTATCAACAAAAGT
TAGTAGAGCTGACTGAACTGAAGACCTCGAGGACAGGAGGTCCACTATGTTTTCTTCCGGCTAACCTACAGGATGAAACAATGAATAAAGGGTTGACACC
TGAGAAAGCATTTATGGACTACCAATTCACCTTTCTATCTGGCGCTGCTAATTGTCAAGAGGTTTACTTGCCAATGCGTGATAAGACCCATTGGTATTTA
GTAGTCATTTCCATACCAGAAATGAAAGTGTACATTGCGGATTGTTCAGCTGATTGGGAGAAGAACGAGCAGCGCCAACGTAAAGCAACCTCTTCCATGG
TGGAGTTCATATGCAAACTCTTTAAGTTAGTGTACACCAACACTGGATCACCAAAAGTTTTCCCACCTAATAAGGACTTTGAATTATCTTTCACACCGCC
TTATGGATTAATGGATCCAAAGGAGCTTGCAGTGGACCTAGTGATGGGGTTCACAAATGTCAAAAAGGAAAGAAGTGTTGACGAAGGTTGA
AA sequence
>Lus10010039 pacid=23155636 polypeptide=Lus10010039 locus=Lus10010039.g ID=Lus10010039.BGIv1.0 annot-version=v1.0
MAASSDLSGEADIPDKLHGKLKVICKMANNNGKAKLGLSGNSAKYKFESKKQRNTTPIVNLVSDSELSDGEFKVTFEDIRKKVSCYIFDRELPMDEVLIQ
HDGLKCDRIALWTLISYTWLDTKVITCVAYQQKLVELTELKTSRTGGPLCFLPANLQDETMNKGLTPEKAFMDYQFTFLSGAANCQEVYLPMRDKTHWYL
VVISIPEMKVYIADCSADWEKNEQRQRKATSSMVEFICKLFKLVYTNTGSPKVFPPNKDFELSFTPPYGLMDPKELAVDLVMGFTNVKKERSVDEG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010039
[exp]
0 1

Lus10010039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.