Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34110 842 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 832 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 765 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 598 / 0 PAB3 poly(A) binding protein 3 (.1) AT1G71770 584 / 0 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G34140 358 / 5e-118 PAB1 poly(A) binding protein 1 (.1) AT2G36660 342 / 5e-109 PAB7 poly(A) binding protein 7 (.1) AT3G16380 316 / 5e-100 PAB6 poly(A) binding protein 6 (.1) AT2G18510 121 / 9e-30 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G27000 113 / 1e-26 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010370 [exp] 1180 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 907 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 861 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10035556 [exp] 455 / 2e-146 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014392 [exp] 419 / 2e-138 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 405 / 4e-133 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 402 / 9e-132 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10021396 [exp] 286 / 2e-88 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 152 / 3e-40 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G124200 [exp] 956 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 956 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 891 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 890 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.005G198500 [exp] 686 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 655 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 335 / 8e-107 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 126 / 3e-31 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 119 / 8e-29 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 115 / 3e-27 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10010042 pacid=23155642 polypeptide=Lus10010042 locus=Lus10010042.g ID=Lus10010042.BGIv1.0 annot-version=v1.0 ATGGCACAGGTTCAGGCTCAACATCAACAGTCAGCGGCTACAGTTGGGGCTACGTCGATGCCTGCTCAGAACGGAGTGGCTGTCGCGGCTGGACCGATCC CATTCGGTGCGACCTCCCTCTATGTGGGTGATCTTGATCTGAACGTGACAGAGGCCCAGCTTTTTGATCTGTTTGGTCAAGTCGGTCAGTTGGTCTCCGT TCGGATCTGCAAGGACCAGGCTACACGACGCTCCCTCGGCTATGGTTATGTTAACTATAACAATGGCCAAGAAGCTGCAAGGGCACTGGAGTTGCTGAAC TTCACACCTCTCAATAACAGGCCTATTAGGATCATGTATTCTCATAGGGATCCTAGTGTTCGTAAGAGTGGTGCAGGAAATATCTATATCAAGAACCTTG ACAAGGCCATTGATCACAAAGCATTACATGATACCTTTTCTAGCTTCGGCTCCATTCTCTCTTGCAAAGTGGCTACTGATGCTTCTGGACAGTCCAAGGG ATACGGTTTTGTTCAGTTTGACACTGATGAAGCTGCTAAAAATGCTATTGACAAGTTAAACGGCATGCTTATCAATGATAAGCAAGTTTATGTTGGTCAC TTCGTCCGGAAGCAGGAGAGAGACAGTTCCTTAAGTAACACAAGGTTCAATAATGTGTTTGTGAAGAATCTTTCTGAATCGACAACAGATGAGGATTTGA AGAAAGTTTTTGGGGAGTATGGCTCTATTACCAGTGCTGTAGTGATGAGGGATGGAGATGGGAAGTCGAGGTGTTTTGGATTTGTTAATTTTGAAAATGC AGATGATGCAGCTAAAGCTGTTGAAGCTCTTAATGGAAAAAAACTTGACGACAAAGAGTTGTTTGTGGGGAAGGCTCAGAAAAAATCTGAAAGAGAACTT GAACTGAGAGGACGATTTGAGCAAACCATTAAGGAATCTGTAGATAAGTACCAAGGACTTAATTTATACATAAAAAATTTGGATGACACCATATCTGATG AAAAGCTCAATGAGTTATTTGCTGAATTTGGTACAGTAACATCATGCAAGGTTGTGCGTGATTCTAGTGGAATTAGCAAAGGTTCAGGGTTTGTAGCTTT TGCTACTCCTGAAGAGGCATCTCGAGCTATTAATGAGATGAACGGAAAGATGATTGTTAGCAAACCCCTTTATGTTGCTCATGCTCAACGGAAAGAGGAT CGTAGAGCAAGACTTCAGGCTCAGTTTTCTCAAATGAGGCCTGTTGCCATGTCTCCTTCAGTTGGGCCCCGCATGCCAATGTTTCCTCCCGGTGCACCTG GCCTGGGACAACAGTTTCTTTATGGTCAAGGTCCTCCAGCGATGATTCCACCTCAGGGTGGATTTGGGTACCAGCAGCAGCTAGTTCCTGGGATGAGGCC TGGAGTGGGTCCCATGCAAAATTACTTTGTACCTGTTGTTCAGCAGCAGGGGCAACAGGTTATGCGCCCTGGTGGCCGTCGTGGAGGACAGCAGTCCCAG CAGCCAGTTCCCATGATGCCACAGCAGATGTTCCCTAGAGGACGTGGATCCCGTTACCCTCAAGGAGGTCGCAACATGTCTGAGGTTCCTATGTCAGGTG CCGGTGGCATGCTCTCTGTTCCATATGACATGGGTGGTATGGCAATGCGTGATGCTTCTGCTGGACAGCCTATGCCCATCACAGCTCTCGCATCTGCCCT TGCAAATTCGTCACCTGGAGACCAGAGGACGCTGCTAGGTGAAAGTCTTTACCCATTGGTGCACCAGCTGGAACATGAGTCTGCAGCCAAGGTTACTGGG ATGCTACTTGAGATGGATCAGACTGAGGTGCTGCATCTACTGGAATCACCGGAAGCATTGAAGGCTAAAGTAGCGGAGGCAATGGAAGTTCTTAGGAATG TGTCTGCTGGTGCTGCTCATCCTCAGGCGAACAATGCTGCTGATCAGCTGGCTTCACTGTCCCTGAATGACGGTCTTGCATCCTAA
AA sequence Show only first row Show all	>Lus10010042 pacid=23155642 polypeptide=Lus10010042 locus=Lus10010042.g ID=Lus10010042.BGIv1.0 annot-version=v1.0 MAQVQAQHQQSAATVGATSMPAQNGVAVAAGPIPFGATSLYVGDLDLNVTEAQLFDLFGQVGQLVSVRICKDQATRRSLGYGYVNYNNGQEAARALELLN FTPLNNRPIRIMYSHRDPSVRKSGAGNIYIKNLDKAIDHKALHDTFSSFGSILSCKVATDASGQSKGYGFVQFDTDEAAKNAIDKLNGMLINDKQVYVGH FVRKQERDSSLSNTRFNNVFVKNLSESTTDEDLKKVFGEYGSITSAVVMRDGDGKSRCFGFVNFENADDAAKAVEALNGKKLDDKELFVGKAQKKSEREL ELRGRFEQTIKESVDKYQGLNLYIKNLDDTISDEKLNELFAEFGTVTSCKVVRDSSGISKGSGFVAFATPEEASRAINEMNGKMIVSKPLYVAHAQRKED RRARLQAQFSQMRPVAMSPSVGPRMPMFPPGAPGLGQQFLYGQGPPAMIPPQGGFGYQQQLVPGMRPGVGPMQNYFVPVVQQQGQQVMRPGGRRGGQQSQ QPVPMMPQQMFPRGRGSRYPQGGRNMSEVPMSGAGGMLSVPYDMGGMAMRDASAGQPMPITALASALANSSPGDQRTLLGESLYPLVHQLEHESAAKVTG MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSAGAAHPQANNAADQLASLSLNDGLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10010042 [exp]	0	1
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	9.3	0.8326
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	10.2	0.8156
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10034458 [exp]	13.3	0.8207
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	14.7	0.8116
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	17.4	0.8262
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	31.9	0.7927
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	34.3	0.8109
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	34.8	0.7970
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	42.1	0.8130
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	44.4	0.7976

Compare expression of checked genes

Lus10010042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.