Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06536 142 / 4e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G06534 104 / 3e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010241 [exp] 518 / 0 AT4G06536 140 / 1e-40 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10018730 [exp] 360 / 3e-122 AT4G06536 173 / 2e-53 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Lus10024806 [exp] 204 / 4e-63 AT4G06534 72 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025000 [exp] 384 / 8e-130 AT4G06536 173 / 6e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) Potri.002G123800 [exp] 377 / 3e-127 AT4G06536 174 / 3e-52 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10010045 pacid=23155638 polypeptide=Lus10010045 locus=Lus10010045.g ID=Lus10010045.BGIv1.0 annot-version=v1.0 ATGTTCATTTGGCGCACCAGCTGCTCCTACTGCTTCAAACGACCCGCTCGAGACCCGACCCTCGACCCGGCCCCACACACCCCCACCCTTCACGACGGCA TCGCCAGAATCCATCACCGTCACGACGACGACACCACCACCCATAACTCGCCAATCCAATTCCCGACCGACTGCAAACGAAAGGCCGGAAGTTACCACGT CTTCAAGCGGAACCCATCTGCTCGCCCGCTGTTCAATTGGGCCGATCACCCTTCTCTCGTCACCGACGCCTTCGAGAACGGATGGTCCATATTCGGATTC ACCTCTCCGCCACAATCCTCCTCTTCCACCCCCGTGGTCGGATCATCCTCGATAATGGTGTTCCTCACCAGGCTCTGCTCCGGCCGGGAGCAGGAAGTGA GGTTAGCGGCGTCGGAGCCGGAGATAAGCTGGGAGGTGAGCCAATCGTCGGCCGATTTTATGCAGAAGATACGGTTGAACCCCGGTGGGGAGAAGAGGAG ATTCCTCCTCGGCGCCGGAATCAATGTTCCATCGGTGATCAGAACAGCTCTGCCGCTACCAGGGCCGTCGCTGGGGAACCAAGTTAATTCGGCGTTTCCT CAAGAGGCCTACTTCGAGATCACCATTTCTTACCCTGGGGGAGAGGATTGCTATCAGAATGGTCGTCGGTCGTCGTCCGCTAGGAAAGGCGAAAAGATTA AACTGGTTCAGGAATTAGCTACCACTAATCCCAATTCGGCCGAGTTAAAGATCTCAGCCGGTAAAGATGAGAATAAGAAGAGTGAAGTAATTTCTTGTGT GGTGATTGGGCTCTCTGTTGGCAGCGGATCATGTCCTCCTTTCAAAATCCCTGGAAGCTATCAAGGCTCTATTGGTTTCAACTCCAATGGCTCTGTTTAT CTTGATGGGCTGAAATTTGTGTTTGAATCAAAGGTACCATCAGATTGGAGAAATACAAGGGAGAGAGTGATAGGGTGCGGGTTTGATCCGAGGCAGAAGA AAGTGTTGTTCACAGTGGATTCCCAGCTAGTACACACAATCCACTGCAAGTCAGACGAGTTCGGAACACCTCTGTACCCAACAGTGGCGGCCAACGGTGA CGTAGTGGTTCTGGTGAACTTGGGACAGAGTGCTTTCAGTTATGAGCCGGCAAATGCGCATAGAACTCCCAACCCTTGCTTCATTGGACCACTGGTAAAA TCTGCTGCTGCTTTAGGGTATGATGAAGACAGTAAAGAGTTGTTTTCAATGGGGAAGATTGATTCCCAGTGGTTGAACAGAAGTGCCACCAAGTACCCTC GTACCGACATTAAGGAATCCGAAGAGGGGGAGGAATCAGAGGCTGAGTTGTTTGAGATTGTACTGGACAGTGGGCCCATCTCCTGA
AA sequence Show only first row Show all	>Lus10010045 pacid=23155638 polypeptide=Lus10010045 locus=Lus10010045.g ID=Lus10010045.BGIv1.0 annot-version=v1.0 MFIWRTSCSYCFKRPARDPTLDPAPHTPTLHDGIARIHHRHDDDTTTHNSPIQFPTDCKRKAGSYHVFKRNPSARPLFNWADHPSLVTDAFENGWSIFGF TSPPQSSSSTPVVGSSSIMVFLTRLCSGREQEVRLAASEPEISWEVSQSSADFMQKIRLNPGGEKRRFLLGAGINVPSVIRTALPLPGPSLGNQVNSAFP QEAYFEITISYPGGEDCYQNGRRSSSARKGEKIKLVQELATTNPNSAELKISAGKDENKKSEVISCVVIGLSVGSGSCPPFKIPGSYQGSIGFNSNGSVY LDGLKFVFESKVPSDWRNTRERVIGCGFDPRQKKVLFTVDSQLVHTIHCKSDEFGTPLYPTVAANGDVVVLVNLGQSAFSYEPANAHRTPNPCFIGPLVK SAAALGYDEDSKELFSMGKIDSQWLNRSATKYPRTDIKESEEGEESEAELFEIVLDSGPIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	0	1
					Lus10002087 [exp]	1.0	0.9770
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	2.0	0.9489
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	2.6	0.9473
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	2.8	0.9608
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	3.5	0.9523
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	3.9	0.9487
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	5.3	0.9137
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	5.7	0.9409
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	6.0	0.9279
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	6.0	0.9479

Compare expression of checked genes

Lus10010045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.