Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47820 1495 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 1166 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT5G60930 552 / 4e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 248 / 2e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 243 / 1e-66 ATP binding microtubule motor family protein (.1) AT3G19050 245 / 3e-66 POK2 phragmoplast orienting kinesin 2 (.1) AT3G45850 243 / 3e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 239 / 8e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 236 / 3e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G63480 223 / 2e-63 ATP binding microtubule motor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024805 [exp] 1727 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 1718 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000762 [exp] 580 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 573 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027934 [exp] 249 / 2e-67 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 248 / 4e-67 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10009073 [exp] 246 / 4e-67 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 244 / 1e-66 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 243 / 2e-66 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024700 [exp] 1667 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 1661 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 1392 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 874 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 771 / 0 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G082400 [exp] 245 / 5e-67 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 244 / 1e-66 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 241 / 7e-66 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G145800 [exp] 244 / 9e-66 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.006G210700 [exp] 239 / 3e-65 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10010047 pacid=23155630 polypeptide=Lus10010047 locus=Lus10010047.g ID=Lus10010047.BGIv1.0 annot-version=v1.0 ATGGAAAGCCCGACTTGTCCTTCACCTGTTTCCTCTCCCGGAGGAGGAGGAGCAGAGAACTGCTGTGTAAAAGTAGCAGTACACGTGAGACCGCTGATCG CCGATGAGAGAGCTCAAGGCTGTAAAGACTGCGTCACTCTCGTCCCTGGAAAGCCTCAGGTACAAATAGGTAGTCATTCGTTTACATTTGATCATGTCTA TGGGAGCACTGGATCGCCTTCTTCTGCCATGTTTGAGGAATGTGTTGCTCCTCTTGTTGATGGCTTGTTCCACGGATACAACGCTACTGTTCTTGCCTAT GGTCAGACTGGCTCGGGGAAGACATATACAATGGGTACTGGCTTTAAAGATGGCTGCCAAACTGGAATAGTTCCTCAAGTGATGAGTATTCTGTTTGCCA AGATTAATGCTTTCAAGCATCAAGCTGAATTCCAACTCCATGTTTCTTTCATTGAGATTCTAAAAGAAGAAGTGAGAGACTTGCTGGATCCTGCATCTTT ACACAAAACAGAATCAACGAATGGACATGTGGGGAAACAAAATGTTCCTGGAAAACCTCCTATACAGATTCGTGAATCTTCGAATGGTGTGATAACACTA GCTGGATCCACTGAAGTTGGTGTAAGCAGTTTGAACGAAATGGCTGCTTACCTAGAGCAAGGATCGCTGAGCAGGGCAACTGGGAGTACAAATATGAATA ACCAATCTAGCCGGTCTCATGCCATTTTCACCATCACGCTAGAGCAAATGCGCAAAAACAATACAGCCTTTCCTGGAGATGGAAGTCCTAATGACAGCAT GAATGATGAGTATCTGTGTGCTAAGTTGCATTTGGTAGATCTTGCTGGATCAGAGAGGGCTAAGAGGACAGGTTCTGATGGCTTGCGTTTCAAAGAGGGC ATTCACATCAACAAAGGCCTTCTGGCACTTGGAAATGTTATCAGTGCACTTGGTGATGAAAAAAAGCGTAAAGAAGGCGTTCACGTTCCTTATCGGGACA GTAAATTGACCCGCCTTTTGCAGGACTCTCTCGGTGGTAACAGCAGAACCTTCATGATAGCATGCATTAGCCCTGCTGATATAAATGCCGAGGAAACCCT TAACACTCTTAAGTATGCAAATCGCGCTCGCAATATTCAAAACAAGCCAGTTGTCAACCGAGATCCTATGTCCAGTGAGATGCTCAAAATGCGGCAACAA CTGGAGTATCTTCAGGCTGAACTTTGTACCAGAGGAGGATCTTCACCTAATGAACTCCAGGTGCTGAAAGAAAGGATTGCTTGGCTGGAAGCTACAAACG AGGATCTTTGTAGAGAGCTTCATGTATACCGCAGCAAGTGTGCTTCTGTGGACCCTCTTGAAATGGATGCTCAAGACAGTAGTATATATACTGTGAAAGG TGAGGGACTTAAAAGGAGCTTGTCTAGCCTAGAGTCATCAGACTATCAAATGGGCGAAACAATGCCAGGTGATTGTACTAGAGAAATTGATGAAGAAGTA GCAAAAGAGTACACACTACTCCGAAACACAATGGATAAGGAGCTGCACGAGTTGAATAGACGCTTGGAAGAGAAAGAGTCAGAGATGAAACTTGTTGGAG GATTAGACACTGCAGCACTCAAACATCTCTTTGGGAAGAAAATAATGGCATTGGAGGATGAAAAAAGAGGTGTTCAGCAAGAACGAGATCGTCTGTTAGC TGAAATTGAAAATCTTTCAGCTGATGGGCAGACACAAAAGTTACATGATGTTCATGCCCAGAAGCTGAAAACATTAGAGGCACAGATTCTGGATCTTAAG AAGAAACAGGAAAGCCAGGTCCAGCTTTTGAAGCAAAAGCAAAAAAGTGACGAAGCAGCTAAAAAACTGCAAGAAGAAATACAATCTATAAAGGCGCAAA AGGTGCAATTGCAACAAAGGATGAAGCAAGAGGCTGAACAATTTCGACAATGGAAAGCCTCTAGGGAAAAGGAATTGCTTCAGCTGCGTAAAGAAGGGAG AAGAAATGAATACGAAAGGCATAAACTACAAGCCATAAACCAGCGCCAGAAAATGGTTCTGCAGAGGAAAACAGAAGAAGCAGCTGTTGCTACCAAAAGG CTAAAGGAGTTGCTTGAAGGTCGGAAATCTTCACATCGAGATAAGACAGGTCTTGTCAATGGACATGTATCCAATGGACAGAGTAACGAGAAATCGTTAC AGAGGTGGCTTGAGCATGAGCTAGAAGTGATGGTGAATGTTCATGAAGTTCGCTTCGAATATGAGAAGCAACGCGAAGTGAGAGCTGCACTGGGAGAAGA GCTGGCTGTATTGAAGAGAGTAGATGAGCTTGCTTCAAAAGGATTAACCCCGCCAAATGGAAAGAATGGATTTGCTAGAGCTTATTCAATGTCAGCAAAT GCTAGAATGGCGAGAATAGGTTCGCTGGAGAGCATGGTAAGCATATCATCAAACTCACTTGTGGCAATGGCTTCACAACTCTCAGAGGCAGAAGAGCGTG AACGCGGTTTGGCTGCCCGTGGTCGTTGGAATCAGTTACGTTCCATGGGAGAGGCAAAGAACTTTCTTCAGTACATGTTCAATTCTCTTGGAGATTCAAG GTGCCAATTGTGGGAGAAGAATATGGAAATCAAGGAAATGAAGGAACAGTTCAAAGAACTTGTTAATTTGGTACGAGAAAGTGAAAGTCGAAGAAAGGAT GTGGAGAAGGAGTTGAGGGTTAGAGAGCAAGCTGTTGCTGTTGCTTTGGCTACTGCAGCTTCGGCTGGCCAAGAACAGGCGAACTCAACTCAGTTACTAA AACACAGTGCTGATGAAATGACGAGGGGACCCTTGTCTCCAGTTTGTGTGCCAGCGCAGAAGCAGCTGAAATTTACACCAGGAATTGTTAATGGCCCAAT CAGAGAAACAGCAGCATTTGTGGATCAGTCAAGAAAAATGGTACCACTTAAGCAAGCATCAACAAGAAGAAAACAAGTTGCAGGACAAGGTGGGAAGCTA TGGAGATGGAAGAGAAGCCATCACCAATGGCTTTTGCAATTCAAATGGAAATGGCAGAAGCCATGGAGGGTCTCTGAGATGATCAGACTCAGCGACCAAA CGATTACAAGGTCAAAGCACCGTCTACAATATCAAACACGTGTCTCGTAA
AA sequence Show only first row Show all	>Lus10010047 pacid=23155630 polypeptide=Lus10010047 locus=Lus10010047.g ID=Lus10010047.BGIv1.0 annot-version=v1.0 MESPTCPSPVSSPGGGGAENCCVKVAVHVRPLIADERAQGCKDCVTLVPGKPQVQIGSHSFTFDHVYGSTGSPSSAMFEECVAPLVDGLFHGYNATVLAY GQTGSGKTYTMGTGFKDGCQTGIVPQVMSILFAKINAFKHQAEFQLHVSFIEILKEEVRDLLDPASLHKTESTNGHVGKQNVPGKPPIQIRESSNGVITL AGSTEVGVSSLNEMAAYLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKNNTAFPGDGSPNDSMNDEYLCAKLHLVDLAGSERAKRTGSDGLRFKEG IHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTFMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSSEMLKMRQQ LEYLQAELCTRGGSSPNELQVLKERIAWLEATNEDLCRELHVYRSKCASVDPLEMDAQDSSIYTVKGEGLKRSLSSLESSDYQMGETMPGDCTREIDEEV AKEYTLLRNTMDKELHELNRRLEEKESEMKLVGGLDTAALKHLFGKKIMALEDEKRGVQQERDRLLAEIENLSADGQTQKLHDVHAQKLKTLEAQILDLK KKQESQVQLLKQKQKSDEAAKKLQEEIQSIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQAINQRQKMVLQRKTEEAAVATKR LKELLEGRKSSHRDKTGLVNGHVSNGQSNEKSLQRWLEHELEVMVNVHEVRFEYEKQREVRAALGEELAVLKRVDELASKGLTPPNGKNGFARAYSMSAN ARMARIGSLESMVSISSNSLVAMASQLSEAEERERGLAARGRWNQLRSMGEAKNFLQYMFNSLGDSRCQLWEKNMEIKEMKEQFKELVNLVRESESRRKD VEKELRVREQAVAVALATAASAGQEQANSTQLLKHSADEMTRGPLSPVCVPAQKQLKFTPGIVNGPIRETAAFVDQSRKMVPLKQASTRRKQVAGQGGKL WRWKRSHHQWLLQFKWKWQKPWRVSEMIRLSDQTITRSKHRLQYQTRVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10010047 [exp]	0	1
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10022759 [exp]	1.7	0.8694
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	3.3	0.8892
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10000719 [exp]	3.5	0.8646
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	6.7	0.8551
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	7.2	0.8695
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	7.5	0.8252
					Lus10001135 [exp]	8.7	0.8330
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	12.6	0.8424
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	17.9	0.8451
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	18.4	0.8245

Compare expression of checked genes

Lus10010047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.