Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06744 420 / 9e-146 Leucine-rich repeat (LRR) family protein (.1) AT3G19320 306 / 6e-100 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 304 / 6e-99 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 240 / 3e-74 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 234 / 2e-72 Leucine-rich repeat (LRR) family protein (.1) AT4G29240 233 / 2e-72 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 238 / 3e-71 LRX1 leucine-rich repeat/extensin 1 (.1) AT4G13340 235 / 4e-70 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G33970 232 / 2e-69 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 234 / 3e-69 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027878 [exp] 299 / 7e-97 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 272 / 2e-88 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 241 / 5e-76 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 239 / 2e-75 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 226 / 2e-69 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 227 / 1e-68 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10021001 [exp] 226 / 2e-67 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 223 / 8e-66 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10012929 [exp] 206 / 4e-62 AT4G29240 459 / 1e-160 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G024300 [exp] 489 / 2e-172 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 401 / 5e-138 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 397 / 2e-136 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098601 [exp] 327 / 1e-107 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 255 / 6e-77 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G152800 [exp] 244 / 9e-77 AT4G29240 472 / 3e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 241 / 3e-74 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G158814 [exp] 241 / 4e-74 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 240 / 9e-74 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 236 / 1e-73 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010049 pacid=23155626 polypeptide=Lus10010049 locus=Lus10010049.g ID=Lus10010049.BGIv1.0 annot-version=v1.0 ATGCCTACCAAATCTTCATTTCTCCTGCTCTCCCTAATCCTCTCTACCTTCTTAGTCCAACCTCTAGCAGCTCTCCATTCATCCAGGCGATCCAAAGCCC GAACCAAGCCACCACCGCCATCTCCCCCTACTAATCTCCCAACGGATAAGCTCCTCACCTTCGCCGATTCCAGGCTGGCAGTTATTTACCCAGTTGTCCA AAAATTCAAATCTACAATAACCTCTGACCCACTCGGTATCACTTCCACCTGGGTCGGGTCAGACCTCTGCAACTACAAAGGCTTCTTCTGCGATAACCCG CCCGACAATTCCTCCGCCACCACCGTCGCCTCTATCGACTTCAACGGCTTCCACCTCTCCGCTCCCACCCTCGACGGATTCCTCGACCGTCTCCCTGACA TCGCCTTGTTTCACGCCAACTCCAATTTCTTCTCAGGAACAATCTCCTCCTCCATCTCTACCCTCCCTTACCTCTACGAGCTCGACATCAGCAACAACCT CTTCTCCGGCCCCTTCCCCTCCGCCCTACTCACAATGAACGGATTGACATTCCTAGACATCCGGTTCAATTCCTTCGCCGGTTCGGTCCCTCCCCAAATC TTCGTCCAAAACTTAGAAGCTCTGTTCCTCAACGACAACCAATTCGTTACGAATTTACCCGTCAATTTGGATAGCACCCGCATCATCTACCTAACACTGG CCAACAATAAGCTCACCGGTCCCATCCCTGGTTCGATTTTTAAATCGTTCGCTTCGCTGACGGAGGTGTTGCTCATCAACAACCAGCTTACCGGGTGTCT TCCTTACGAGGTTGGGATGCTCAAGGAAGCTGTGGTGTTCGACGTGGGAAACAACCGGCTTACGGGTCCGTTGCCGTTGTCGTTGGCATGTTTGGAGAAG GTGGAGCAGCTGAATTTCGCCGGGAACGAGTTTTACGGAGTGGTTCCGGATTTGCTCTGTAGAGAGCTGGGGATTGCTAATTCGGTGAATATGACGCTGG CGGGGAATTATTTCACCGGGATTGGGTCTTCTTGGTGTATGGATCTGATTCGAGGTGGGATTCTGGATGTGAGCAACAACTGTATACCGGGATTTCCGTC GCAGAGATCGATTCTTGAATGTGCTGAGTTCTTCGCGAAGCCGAAAGTGATGTGCCCTCGGCCTTGGTCTTATGCTTATATTCCTTGTGGGCCGTTGTCC GCCGCTTCCTCCTCCATTTCTGGATTGGTTCCGCCACCTTAA
AA sequence Show only first row Show all	>Lus10010049 pacid=23155626 polypeptide=Lus10010049 locus=Lus10010049.g ID=Lus10010049.BGIv1.0 annot-version=v1.0 MPTKSSFLLLSLILSTFLVQPLAALHSSRRSKARTKPPPPSPPTNLPTDKLLTFADSRLAVIYPVVQKFKSTITSDPLGITSTWVGSDLCNYKGFFCDNP PDNSSATTVASIDFNGFHLSAPTLDGFLDRLPDIALFHANSNFFSGTISSSISTLPYLYELDISNNLFSGPFPSALLTMNGLTFLDIRFNSFAGSVPPQI FVQNLEALFLNDNQFVTNLPVNLDSTRIIYLTLANNKLTGPIPGSIFKSFASLTEVLLINNQLTGCLPYEVGMLKEAVVFDVGNNRLTGPLPLSLACLEK VEQLNFAGNEFYGVVPDLLCRELGIANSVNMTLAGNYFTGIGSSWCMDLIRGGILDVSNNCIPGFPSQRSILECAEFFAKPKVMCPRPWSYAYIPCGPLS AASSSISGLVPPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06744			Leucine-rich repeat (LRR) fami...		Lus10010049 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	4.6	0.9382
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10041241 [exp]	5.1	0.9223
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	7.7	0.8961
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023532 [exp]	8.0	0.9160
AT3G20898			unknown protein		Lus10040827 [exp]	8.3	0.8881
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10040417 [exp]	9.5	0.9128
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	14.2	0.9176
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	15.2	0.8334
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	16.7	0.9160
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	18.4	0.8796

Compare expression of checked genes

Lus10010049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.