Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24240 228 / 2e-72 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G23320 136 / 2e-37 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G31550 136 / 2e-37 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 130 / 3e-35 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT3G04670 129 / 2e-34 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G30590 129 / 3e-34 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT5G28650 127 / 1e-33 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT1G29280 104 / 8e-26 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 99 / 7e-24 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 99 / 5e-23 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006261 [exp] 241 / 2e-77 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2) Lus10041600 [exp] 234 / 2e-74 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10024864 [exp] 134 / 3e-36 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 133 / 5e-36 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 132 / 2e-35 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 132 / 3e-35 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10020136 [exp] 130 / 6e-35 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10026936 [exp] 130 / 9e-35 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10021999 [exp] 129 / 9e-35 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G123300 [exp] 301 / 9e-101 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 287 / 3e-95 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.007G047400 [exp] 221 / 1e-69 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 209 / 4e-65 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.018G139300 [exp] 139 / 1e-38 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.006G072400 [exp] 138 / 3e-38 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2) Potri.002G043500 [exp] 136 / 4e-37 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G219500 [exp] 136 / 5e-37 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 132 / 2e-35 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.005G055300 [exp] 131 / 3e-35 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10010053 pacid=23155644 polypeptide=Lus10010053 locus=Lus10010053.g ID=Lus10010053.BGIv1.0 annot-version=v1.0 ATGGCAGTTGAGCTTATGATGGGTTACTCCGGCGAGGGCCGATTCGCCACCAAGTTCCAAGAGAGCGCACTGAAGGAAGCCGCCACCGCCGGGGTTCGGA GCGTGGAGGAGGTGATTAACTTGCTCAACAAGAATTTCTACAAGGAAGAGGCCTCCGGTTCTACCGGTTCTTCCGGTTCTTCTTCTTCTTCCGCCGCCGT TGATGCCAATCCTGACATCAAAGTGGTCACCGATTTGGCCGTTAATAACTTCAAAAAGGTAGTTTCTCTTCTTGGTCGACCTAATCGGACCGGCCACGCC CGATTCAGAAGGGCCCCTACTGTTGACGCAGCCGGAGCGGTGACCAAGCAAGGATCTGCCTCCGTTTCTGGTACTGGCTCTGCTTTCAAGGTCTACCAAC CGACACCGGTTCACCGGTTGCCTCCTTTACCCACAAATCACTACCAGAACTACCAAAAGGCGGCGACAAAGGAGAGGAATGAATTAGTATTACCTTGCAC AATAAATTTCTCGAATTCTCCATCAATCTCCGGCGCTACCTCTTTCATTTCTTCAGTAACAGGGGAAACCAGCGACAGTATGCAGAGATCTATGTCGTCA TCTGGGTTTCAGTTGACGCATCCCCATAGTCACGGGAAACCTCCGCTGTCTTCTTCCTCCCTCAAGAGAAAGTGCAGTTCCATGGATGATACAAACGCTC TCAAGTGCGGATCCTCTTCCAGCAGATGCCATTGTTCCAAGAAAAGGAAATTGAAGATGAGAAGAGTAGTCAGAATCCCGGCGATCAGCAGTAAACTCGC GTACATCCCTACGGACGATTACTCGTGGAGGAAATACGGACATAAACCAATCAAGGGTTCTCCTCATCCTAGGGGATACTACAAGTGTAGCAGCGTGAAG GAATGTCCGGCGAGGAAACATGTGGAAAGGGCACTTGACGATCCGATGATGCTGATTGTCACCTATGAGGGAGATCATAATCACAACCACACCGACTTGC CGCCGACTACTGCTCATGTTCAGGAATCGTGCTAG
AA sequence Show only first row Show all	>Lus10010053 pacid=23155644 polypeptide=Lus10010053 locus=Lus10010053.g ID=Lus10010053.BGIv1.0 annot-version=v1.0 MAVELMMGYSGEGRFATKFQESALKEAATAGVRSVEEVINLLNKNFYKEEASGSTGSSGSSSSSAAVDANPDIKVVTDLAVNNFKKVVSLLGRPNRTGHA RFRRAPTVDAAGAVTKQGSASVSGTGSAFKVYQPTPVHRLPPLPTNHYQNYQKAATKERNELVLPCTINFSNSPSISGATSFISSVTGETSDSMQRSMSS SGFQLTHPHSHGKPPLSSSSLKRKCSSMDDTNALKCGSSSSRCHCSKKRKLKMRRVVRIPAISSKLAYIPTDDYSWRKYGHKPIKGSPHPRGYYKCSSVK ECPARKHVERALDDPMMLIVTYEGDHNHNHTDLPPTTAHVQESC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	4.6	0.8199
AT5G66880		SNRK2-3, SNRK2....	SUCROSE NONFERMENTING 1 \(SNF1...		Lus10019641 [exp]	5.5	0.7566
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	6.5	0.7981
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	6.5	0.8001
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	7.5	0.7938
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	8.5	0.7678
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	11.0	0.7805
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	12.0	0.7725
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	12.4	0.7778
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	13.4	0.7150

Compare expression of checked genes

Lus10010053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.