Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 127 / 4e-35 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 122 / 2e-33 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G04510 75 / 2e-16 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT3G10540 74 / 8e-16 3-phosphoinositide-dependent protein kinase (.1) AT1G45160 71 / 7e-15 Protein kinase superfamily protein (.1.2) AT1G30640 70 / 2e-14 Protein kinase family protein (.1) AT1G03920 69 / 4e-14 Protein kinase family protein (.1) AT4G24400 66 / 4e-13 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT4G33080 63 / 3e-12 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT5G09890 63 / 5e-12 Protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033125 [exp] 181 / 6e-55 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 182 / 7e-55 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 127 / 2e-34 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 115 / 4e-32 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10042337 [exp] 73 / 9e-16 AT5G41310 96 / 1e-21 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10027086 [exp] 72 / 2e-15 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028834 [exp] 70 / 1e-14 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10017448 [exp] 69 / 3e-14 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10005470 [exp] 68 / 1e-13 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073700 [exp] 147 / 6e-43 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 125 / 2e-34 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 120 / 9e-33 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G028800 [exp] 77 / 5e-17 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 76 / 2e-16 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.002G263000 [exp] 73 / 2e-15 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G209700 [exp] 63 / 4e-12 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.006G068400 [exp] 63 / 5e-12 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G224800 [exp] 62 / 5e-12 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.002G125800 [exp] 62 / 9e-12 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10010054 pacid=23155625 polypeptide=Lus10010054 locus=Lus10010054.g ID=Lus10010054.BGIv1.0 annot-version=v1.0 ATGTTGAGAACGATACCTCAGGGGAAGTTTGAGAAGGTGTTCATGGTGCAAGGGAGCAAGCCTCAACTTGGCAATGGCCATGTCATTTTTGCAATGAAAG AGATGAGCAGGGATAATATAATCAAGAAGAAGCACGTGGATTATATAAGAGTTGACAAATATGTTCTCACTGAACTCGTCTATCCTTTCTCCATCGAACT TCCTTACTCTTTTTGTACCAACACAAAGCTAAATTTGATCATCTATGTCATGTACAGAGGCCATCTCTTCTTCCACATCTATCGCCAAGGGATCTTCAGT GAGGATCGGTTGAAGCTTAGTGCTGCTGAATTTGTGTCTTTTGTTTCACATTTCCATGATTACTGGATCGTGCATCAAGATTTCGGGCCTGGAAATATTC TCTCGAGTGTCGAAGGATATGTTGTGCTACTTGATTTTGCAAAGGAGATGAATGAATCCAGTAGGTAG
AA sequence Show only first row Show all	>Lus10010054 pacid=23155625 polypeptide=Lus10010054 locus=Lus10010054.g ID=Lus10010054.BGIv1.0 annot-version=v1.0 MLRTIPQGKFEKVFMVQGSKPQLGNGHVIFAMKEMSRDNIIKKKHVDYIRVDKYVLTELVYPFSIELPYSFCTNTKLNLIIYVMYRGHLFFHIYRQGIFS EDRLKLSAAEFVSFVSHFHDYWIVHQDFGPGNILSSVEGYVVLLDFAKEMNESSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	0	1
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	1.0	0.8163
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	5.5	0.7567
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	9.8	0.7512
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	14.0	0.7244
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	15.3	0.7244
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	16.5	0.7244
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	17.5	0.6568
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	17.7	0.7244
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	18.7	0.7244
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	19.0	0.6506

Compare expression of checked genes

Lus10010054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.