Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54250 560 / 0 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT5G15410 343 / 1e-108 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT3G17700 206 / 5e-57 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) AT4G30360 205 / 5e-57 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT1G01340 200 / 2e-55 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT5G53130 200 / 2e-55 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT5G57940 196 / 8e-54 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT3G17690 196 / 1e-53 ATCNGC19 CYCLIC NUCLEOTIDE-GATED CHANNEL 19, cyclic nucleotide gated channel 19 (.1) AT5G14870 193 / 6e-53 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT1G19780 193 / 1e-52 ATCNGC8 cyclic nucleotide gated channel 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030698 [exp] 322 / 3e-101 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10005221 [exp] 250 / 5e-76 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10031891 [exp] 214 / 5e-60 AT3G17700 887 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Lus10021461 [exp] 210 / 5e-59 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10016097 [exp] 207 / 2e-58 AT2G28260 689 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10026233 [exp] 209 / 3e-58 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042434 [exp] 208 / 7e-58 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10037394 [exp] 206 / 2e-57 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10020122 [exp] 203 / 2e-56 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G407800 [exp] 570 / 0 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.017G089800 [exp] 350 / 3e-111 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.017G089900 [exp] 311 / 2e-96 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.015G034000 [exp] 227 / 1e-64 AT3G17700 905 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.012G038700 [exp] 216 / 9e-61 AT3G17700 818 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 20, cyclic nucleotide-binding transporter 1 (.1) Potri.018G097600 [exp] 206 / 1e-57 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.015G019100 [exp] 202 / 6e-56 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G106100 [exp] 199 / 7e-55 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 195 / 2e-53 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 195 / 3e-53 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010061 pacid=23158849 polypeptide=Lus10010061 locus=Lus10010061.g ID=Lus10010061.BGIv1.0 annot-version=v1.0 ATGGACTCCTCCCCCCATGATGCCACACGTGCAACTCACATGCAATACCTCACAAGGGACGACGACAGCCACGATGATGACAATGAAGACTACGAGGAGG AGGACGGGAGTGAAGATGATGATGAATTCGGCGAAGCCGAATATGCCACGGTGGAGGAACAACAGGCAGCGGCGGAGGTGGACGGTGGTGGTGGAAAAAG GAGTCGAATGAGTTCGTTCATGGCCTTCTTCGCCGGCGGTGGTGGAAGTAAGAGTAGGCGACGGAGGAGGCAGAGGTTGGGAGGAGGGGATTGGAACAGG GTGTACTTGGTGGTGTGCGCCATGGGTTTGTTTGTGGACCCGCTGTTCTTCTACGCACTCTCAATTAGCGACTCTTACATATGTCTCTTCATTGACGGAT GGTTCGCACTCACCGTGACGTCACTCCGTTGCATGAACGACCTCCTTCATCTCTTCAATATCTTCCACCAGTTCACCGGCGACGGGAGGAGGGTTGTTGG TAACTCGACCCGATACTTGAAAGAAAAGAAGGGTTTATTCCTTGACCTCTTCGTCATCCTCCCCTTACCACAGATTGTACTGTGGGTGGTGATCCCATGG TTGCTGAAAGCAGGGGCAGTAACAGGGCTAATGACACTGAGCCTGGTAATGTTTCTGTTGCAATACCTCCCAAAGATATATCACTCGGTGTGCATCCTCC GCCGCATGCAAGATCACTCCGGCTACATCTTTGGCACTGTTTGGTGGGGCATTTTCCTCAACTTAATTGCTTACTTTGTCGCTTCCCACGCAGCAGGAGG GTGTTGGTACTTGTTAGGAATCCAAAGGGCAGCAAAGTGTGTTGAAGAGCAATGCAGGGGAACGAGTGGGTGTAGTCCGAGTGTACTGTCTTGCAAACAG CCAATATACTATGGAACCACCACTAGAAGCTTGAACAACATCATTGACAGCTCAAGAATTGCCTGGGCACACAACAACCATACGAGATTCACTTGCCTCT CTTCCCCGGACCATTATAGCTACGGTGCTTACAAGTGGACCGTTCAGCTCGTCGCCAATGATAACCGTCTCGAGAAGATCCTCTTGCCCATCTTCTGGGG CCTCATGACCCTCAGCACATTTGGGAACCTGGAGAGCACGACGGAGTGGGTGGAAGTTGTGTTCAACATCATTGTCCTAACTGGTGGGGTCCTCTTGGTC ACCATGTTAATCGGAAACATTAAGGTGTTCCTGAATGCGACAACATCGAAGAAGCAGGCAATGCAGTTAAAGATGAGGAACTTGGAGTGGTGGATGAGGA AGAGACGGTTGCCGGTAGGGTTCCGGCAGCGAGTCCGAAACTACGAGCGGCAGAAATGGGCTGCAATGCGAGGCGTGGACGAGTGTGACATGATCAGAAA CCTCCCCGAAGGTCTCCGGCGGGATATCAAATATCACCTTTGCTTGGACTTGGTTAGACAAGTACGTAGGTTATATAACCAGAGAAGGAGATCCAGTGCA CAGAATGCTATTCATAGTGCGCGGCCATCTCCAAAGCAGCCAAGTCCTCCGGGACGGCGTCAAAAGTTGCTGCATGTTGGGTCCTGGCAACTTCTGCGGC GACGAGCTCCTCTCGTGGTGCCTCCGGCGTCCCTTCGTGGAGCGGCTTCCGCCATCTTCATCCACACTCATCACCTTGGAGACGACCGAGGCCTTCGGTC TGGAGGCCGACGACCTCAAGTACGTCACCCAGCACTTCCGTTACACTTTCGTCAAGGAGAAGGTCAAAAGCACCGCCTCACTCTGACGTCGTTGTCGTTT ATCCGGCCTAGGCGGCCGCTGTCCAGATGTTCCTCGCTGGGAGAGGACAGGCTCAGGCTTTACACGGCGTTGTTGACTTCGCCCAAGCCCAATCAGGATG ATTTTGACTTTTGA
AA sequence Show only first row Show all	>Lus10010061 pacid=23158849 polypeptide=Lus10010061 locus=Lus10010061.g ID=Lus10010061.BGIv1.0 annot-version=v1.0 MDSSPHDATRATHMQYLTRDDDSHDDDNEDYEEEDGSEDDDEFGEAEYATVEEQQAAAEVDGGGGKRSRMSSFMAFFAGGGGSKSRRRRRQRLGGGDWNR VYLVVCAMGLFVDPLFFYALSISDSYICLFIDGWFALTVTSLRCMNDLLHLFNIFHQFTGDGRRVVGNSTRYLKEKKGLFLDLFVILPLPQIVLWVVIPW LLKAGAVTGLMTLSLVMFLLQYLPKIYHSVCILRRMQDHSGYIFGTVWWGIFLNLIAYFVASHAAGGCWYLLGIQRAAKCVEEQCRGTSGCSPSVLSCKQ PIYYGTTTRSLNNIIDSSRIAWAHNNHTRFTCLSSPDHYSYGAYKWTVQLVANDNRLEKILLPIFWGLMTLSTFGNLESTTEWVEVVFNIIVLTGGVLLV TMLIGNIKVFLNATTSKKQAMQLKMRNLEWWMRKRRLPVGFRQRVRNYERQKWAAMRGVDECDMIRNLPEGLRRDIKYHLCLDLVRQVRRLYNQRRRSSA QNAIHSARPSPKQPSPPGRRQKLLHVGSWQLLRRRAPLVVPPASLRGAASAIFIHTHHLGDDRGLRSGGRRPQVRHPALPLHFRQGEGQKHRLTLTSLSF IRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	1.7	0.9293
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	1.7	0.9201
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	2.6	0.8811
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	2.8	0.9256
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	5.0	0.8164
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	5.5	0.8924
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	5.7	0.8989
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	6.9	0.8869
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	8.5	0.8740
					Lus10025831 [exp]	8.9	0.8438

Compare expression of checked genes

Lus10010061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.