Plant FIBer expression Database

Lus10010062 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01935 271 / 1e-91 unknown protein
AT4G01915 71 / 4e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G117500
[exp]
291 / 2e-99 AT4G01935 286 / 1e-97 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07281 INSIG Insulin-induced protein (INSIG)
Representative CDS sequence
>Lus10010062 pacid=23158847 polypeptide=Lus10010062 locus=Lus10010062.g ID=Lus10010062.BGIv1.0 annot-version=v1.0
ATGCTAGACGTTGTGGTAGCTTCAGTAGGCTCTGCTCCATTTCCATGGCGCCATGGCACATTCCTCCTACGACGCCATCTCCGTCTTCCCACTATAGGCA
ATCACAAAAGCCACCGCCTTCGTCGTCTCGTATTCAATAAACCACTCTGCAATCTGAGAAACAACAGCGAAAGCACACCGCCGAGTAGGAGCAGTTCCTC
CTGGGCGTCCATTGGCCTCTCGCTTTTCGGATCAGGATTCTTCTTAGGCCCCCTTCTCGACGGAATTCATTCCAGAGTCAATCTCGTCGAGTATCATACT
GGATCCATCGACATCGGCCCCCTCCACACCAACATCTGGGTTCCTCCGCTACTTGGGTTGTTCTACGCTACCGTCGGGTTGCTCCAGCTCTTTCTAGACG
ACAAGGCATCGTCTGAGATTCCACCTGAAAGCCTAGAGAAAGTAGCTGTTTCATTAATAGCACTTGTGGTGTTCCTTGAGCTGAGCGCGGAAATGTACAA
AGCGGGAGTGGCATCCAACATCGAGGCATATGTATTGTTTGCATTAGCAGAGTTTATATGGTTCTCTCTGGATAGAACCTGGTTCGGCTTCACACTGGCA
TCTCTTATAGGCATCTGCTGCCCCCTTGCAGAGATTCCCATAATGAAGTACTTGCACCTTTGGGAGTACCCACAAGCCAACATTGACATCTTTGGTCAGG
GACTAGTTACCTGGACTGTCACCTGCTACTTTGTTTATACGCCGTTCCTCATCAGTTTGTCCAGGTGGTTGAGATCAGTTATAATGAACTCTGCTGACAA
TAAAACCATCTAG
AA sequence
>Lus10010062 pacid=23158847 polypeptide=Lus10010062 locus=Lus10010062.g ID=Lus10010062.BGIv1.0 annot-version=v1.0
MLDVVVASVGSAPFPWRHGTFLLRRHLRLPTIGNHKSHRLRRLVFNKPLCNLRNNSESTPPSRSSSSWASIGLSLFGSGFFLGPLLDGIHSRVNLVEYHT
GSIDIGPLHTNIWVPPLLGLFYATVGLLQLFLDDKASSEIPPESLEKVAVSLIALVVFLELSAEMYKAGVASNIEAYVLFALAEFIWFSLDRTWFGFTLA
SLIGICCPLAEIPIMKYLHLWEYPQANIDIFGQGLVTWTVTCYFVYTPFLISLSRWLRSVIMNSADNKTI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G01935 unknown protein Lus10010062
[exp]
0 1
AT4G23430 AtTic32-IVa translocon at the inner envelo... Lus10014975
[exp]
2.8 0.9353
AT1G71500 Rieske (2Fe-2S) domain-contain... Lus10001278
[exp]
4.8 0.9359
AT2G20920 Protein of unknown function (D... Lus10027826
[exp]
5.4 0.8933
AT4G02920 unknown protein Lus10029640
[exp]
6.9 0.9292
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Lus10007366
[exp]
8.1 0.9207
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Lus10038020
[exp]
8.5 0.9168
AT1G06690 NAD(P)-linked oxidoreductase s... Lus10016327
[exp]
9.2 0.9281
Lus10026628
[exp]
9.9 0.9140
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Lus10039216
[exp]
9.9 0.9186
AT4G15440 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) Lus10031540
[exp]
10.4 0.9096

Lus10010062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.