Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 308 / 7e-109 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004514 [exp] 308 / 4e-108 AT1G09330 269 / 2e-92 unknown protein Lus10031433 [exp] 299 / 1e-104 AT1G09330 315 / 6e-111 unknown protein Lus10010898 [exp] 298 / 2e-104 AT1G09330 313 / 2e-110 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010400 [exp] 315 / 2e-111 AT1G09330 328 / 2e-116 unknown protein Potri.013G006250 [exp] 312 / 2e-110 AT1G09330 330 / 2e-117 unknown protein Potri.002G191700 [exp] 255 / 4e-88 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 169 / 4e-54 AT1G09330 158 / 1e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [flax] [poplar] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Lus10010063 pacid=23158912 polypeptide=Lus10010063 locus=Lus10010063.g ID=Lus10010063.BGIv1.0 annot-version=v1.0 ATGCAGACCCCTGGCGAGAACTATTCCAATCCGAAGACTTGCTTCTTCCATGTCCTCTTCAAGGCAGCAGCTCTAGCGTTCTACATACTGTCGGCTCTCT TCTTTGACAGTTTCGTCATTATCTTTGTGGTAACTGTGGTGCTTGCGGCGCTTGATTTCTGGGTTGTTAAGAATGTCAGCGGCCGGATTTTAGTTGGTCT GAGGTGGTGGAATGAGATTAACGAGGAAGGTGAAAGCGTGTGGAAGTTTGAGAGCCTTGACCAACAGTCTTTGGCAAGGATTAACAAGAAGGATTCCTGG CTGTTTTGGTGGACATTGTACCTTAATGCAGCTGGCTGGATTGTCCTTGGTGTGTTTTCTGTTATAAGGTTTGAGGTTGACTATGTCCTGGTAGTTGCTG TCTGTTTGAGCCTCAGCATTGCAAACATAATTGGGTTCACCAGATGCCAGAAAGATGCTAAGAAGCAGATCCAAGCATTTGCTAGCCAGACTATCGCAAC TAGGTTTTCATCAACTCTGCAGTCTGCCTTCAGCGTGGTGTGA
AA sequence Show only first row Show all	>Lus10010063 pacid=23158912 polypeptide=Lus10010063 locus=Lus10010063.g ID=Lus10010063.BGIv1.0 annot-version=v1.0 MQTPGENYSNPKTCFFHVLFKAAALAFYILSALFFDSFVIIFVVTVVLAALDFWVVKNVSGRILVGLRWWNEINEEGESVWKFESLDQQSLARINKKDSW LFWWTLYLNAAGWIVLGVFSVIRFEVDYVLVVAVCLSLSIANIIGFTRCQKDAKKQIQAFASQTIATRFSSTLQSAFSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	1.0	0.9664
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	1.4	0.8964
AT3G58800			unknown protein		Lus10007354 [exp]	2.4	0.8937
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	2.8	0.8441
AT1G69980			unknown protein		Lus10010734 [exp]	3.9	0.8654
AT2G40935			PLAC8 family protein (.1.2.3)		Lus10005257 [exp]	4.0	0.8101
AT3G05320			O-fucosyltransferase family pr...		Lus10040618 [exp]	5.0	0.7952
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	5.3	0.8471
AT5G10780			unknown protein		Lus10040473 [exp]	6.0	0.8611
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	6.0	0.8417

Compare expression of checked genes

Lus10010063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.