Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 211 / 1e-62 Plant protein of unknown function (DUF247) (.1) AT3G50120 209 / 2e-61 Plant protein of unknown function (DUF247) (.1) AT3G50170 204 / 2e-59 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT4G31980 202 / 5e-58 unknown protein AT3G47250 196 / 4e-57 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50130 187 / 5e-53 Plant protein of unknown function (DUF247) (.1) AT3G50140 186 / 8e-53 Plant protein of unknown function (DUF247) (.1) AT5G22550 183 / 4e-52 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 183 / 5e-52 Plant protein of unknown function (DUF247) (.1) AT2G36430 179 / 7e-51 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038339 [exp] 728 / 0 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 404 / 3e-138 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 370 / 5e-125 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 321 / 3e-105 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 320 / 5e-105 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 315 / 4e-103 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 299 / 2e-100 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 209 / 3e-62 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 194 / 5e-56 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146700 [exp] 381 / 3e-129 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 376 / 1e-126 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 353 / 3e-118 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 329 / 5e-109 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 323 / 2e-106 AT4G31980 217 / 1e-63 unknown protein Potri.017G145100 [exp] 277 / 1e-88 AT4G31980 225 / 1e-66 unknown protein Potri.003G181800 [exp] 230 / 2e-70 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 217 / 1e-65 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 216 / 2e-65 AT4G31980 317 / 1e-101 unknown protein Potri.001G046000 [exp] 215 / 6e-65 AT4G31980 232 / 3e-69 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10010064 pacid=23158892 polypeptide=Lus10010064 locus=Lus10010064.g ID=Lus10010064.BGIv1.0 annot-version=v1.0 ATGGCCGGAGCTCCATCGTCCGACCACGTCGAAATCCCGGTAGAAACATGGCTAACAACTCTAGACCGAAAGCTCCAAGACTCATACCCACCTTCCTCAA ACTGGCGAATCTGCAGAGTCCCAAGAAAGCTCCAGAGCGTGAAGAGAGACGCTTACAGCCCGCACGCAATCTCAATCGGCCCAATCCACCACTCCGCCGA CAACATCAAACCTTTCCACCACCACAAGCTCCACTACGCCACTTCTCTCCTCTCTCGAACAACAATCCCTAATTCCACCAAATCCCTAACCACTCTCTCC GCCTGCGCCAACTTCATCCGCCGCTTCGACCCCACAATTCGCGCCTACTACGCCGAAAACATCCATCTCTCCGATATCCAGCTCGCCGAGATCCTCATCG TCGACTCCCTCTTCATCATCGAGCTCTTCGTCAGATACTTTAATGTGGATCTCCGGCTTGGCCACGACCCGATTTTCACAAGCGCGTGGATGATTCTCAC CCTCCAAAGGGATCTACTGCTGCTTGAGAATCAGATTCCTTTCTTCGTTCTGGAGATGCTGTTCATGATCACCGTCAAGAGAAGTTCTATCGGACCGTCC ATGCCTCCTTTGCCCGAGCTTGCTCTGCTTTTCTTCAAATCAGCTCTGAACATCGACAGTAATGCTGCCGGAGAAATTGACGGAACCAGTACTTGGAGCT GCCACCATTTACTGGATCTAACCTACAAATCTTACTTTCGTCCGTCTGATCCTACGTTGAGGCTGAGAGAAACCAATTCGGATTTGGAAAGAGCGGCGAC GAAAAACAGGGGAAAGCTGAAGAAGAAGAATAAGAAGAAATCTTGGGATCTAATCCAGTCAGCCAAAGAGCTGAAGACATCCGGGATCAAGTTCAGGAAA GATACGACCAACACCCATCTGTTCGACATGTCTTTCAAAGACGGCAAGTTCACGATCCCGCCGCTGAGAGTGCACGATTCGACAGACTCGCTGTTGAGAA ATATGATGGCGTACGAGCAGTTCTCGCACGGAAGCGGGCAGTACTTGAGTTCGTACGTGATGCTGATGGATAGGCTGATCGATACGAAGGAGGATGTCCA GATACTGGAGCGGCGAGGGATCATCGACAACGAATTGGGGGATGCGGAGAATGTGTCGAGTTTGTTCAATGAGATGTGCAAGGAGATTGTGTTCAAGGAG TTTTACTACGATGGACTGTGTGAGGAGGTGAATCGTTACTGTAAGACGTGGTGGCAGAGCTCCAAGGTTTACTTCAAGAGTGTGTATCTGAAAAACATTT GGACGATTGTGTCCTTGGTTGTTGCTGGTTGGGTGCTTGCTGCTACTGCTATCCAAACTGTTTACGCTGTTATGGACTACTATAAGTAG
AA sequence Show only first row Show all	>Lus10010064 pacid=23158892 polypeptide=Lus10010064 locus=Lus10010064.g ID=Lus10010064.BGIv1.0 annot-version=v1.0 MAGAPSSDHVEIPVETWLTTLDRKLQDSYPPSSNWRICRVPRKLQSVKRDAYSPHAISIGPIHHSADNIKPFHHHKLHYATSLLSRTTIPNSTKSLTTLS ACANFIRRFDPTIRAYYAENIHLSDIQLAEILIVDSLFIIELFVRYFNVDLRLGHDPIFTSAWMILTLQRDLLLLENQIPFFVLEMLFMITVKRSSIGPS MPPLPELALLFFKSALNIDSNAAGEIDGTSTWSCHHLLDLTYKSYFRPSDPTLRLRETNSDLERAATKNRGKLKKKNKKKSWDLIQSAKELKTSGIKFRK DTTNTHLFDMSFKDGKFTIPPLRVHDSTDSLLRNMMAYEQFSHGSGQYLSSYVMLMDRLIDTKEDVQILERRGIIDNELGDAENVSSLFNEMCKEIVFKE FYYDGLCEEVNRYCKTWWQSSKVYFKSVYLKNIWTIVSLVVAGWVLAATAIQTVYAVMDYYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	3.5	0.9465
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	4.9	0.9401
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	5.0	0.9360
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10017002 [exp]	6.0	0.9218
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	6.0	0.9374
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	6.2	0.9205
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	7.5	0.9134
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	8.1	0.9390
AT1G26665			Mediator complex, subunit Med1...		Lus10024211 [exp]	8.2	0.9122
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	9.0	0.9321

Compare expression of checked genes

Lus10010064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.