Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36430 236 / 1e-72 Plant protein of unknown function (DUF247) (.1) AT3G50150 237 / 2e-72 Plant protein of unknown function (DUF247) (.1) AT3G50120 223 / 1e-66 Plant protein of unknown function (DUF247) (.1) AT4G31980 224 / 4e-66 unknown protein AT3G50170 219 / 4e-65 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 213 / 5e-63 Plant protein of unknown function (DUF247) (.1) AT3G47250 209 / 3e-62 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50130 208 / 4e-61 Plant protein of unknown function (DUF247) (.1) AT3G50180 205 / 1e-59 Plant protein of unknown function (DUF247) (.1) AT3G44710 199 / 6e-58 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004516 [exp] 877 / 0 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 716 / 0 AT4G31980 251 / 5e-76 unknown protein Lus10039780 [exp] 435 / 3e-150 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 385 / 1e-130 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 308 / 2e-100 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 305 / 6e-99 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 240 / 1e-73 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 238 / 6e-73 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 220 / 2e-66 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 363 / 3e-121 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 350 / 2e-117 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 329 / 5e-109 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 313 / 1e-102 AT4G31980 236 / 1e-70 unknown protein Potri.013G146300 [exp] 308 / 8e-101 AT4G31980 217 / 1e-63 unknown protein Potri.018G029800 [exp] 261 / 1e-82 AT4G31980 317 / 1e-101 unknown protein Potri.017G145100 [exp] 260 / 5e-82 AT4G31980 225 / 1e-66 unknown protein Potri.003G181600 [exp] 246 / 1e-76 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.005G116100 [exp] 242 / 4e-75 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 242 / 7e-75 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10010065 pacid=23158883 polypeptide=Lus10010065 locus=Lus10010065.g ID=Lus10010065.BGIv1.0 annot-version=v1.0 ATGGACAACGTACCAAGAACCAACGCGGGTACCGTCGAAGTTCCGGAGCCATTGCTACTCAGAATTCGATCGGGCTTAGCGAGTGTGCTGCCCCGTTCAT CAAGCTCGAGCATCTTCACCGTCCCGAACAAGCTCCGCGCAGCTAAGCCCGACGCCTACACGCCTCATGTTCTCTCAATCGGACCTTTCCACAACGGCCG CCCAAACCTCGCCGGAATGCAGACTCACAAATGGCGGTATACGCTCCCCTTGCTTGCCCGAACCGAGGATGCAGCTCCCACAATGGAATCCTGCCTCAAG GCAATTCTCGGATTTGAATCCGAGGTCCGATCTTGCTACGCGGAATGGATTAACCTCGATTCCTCGCAGCTCGCCGAGATTCTTTTCCTTGACGGCTGCT TCATCCTCGAGCTCTTCCTTCGGTACCGGAAGATCGAGCCGAATCTGAAACACGGCGATTTGAAAAACGATCCAATTTTCACTACCTCATGGATAATTTC CACTCTGCAGAGGGACATGGCGCTGCTGGAGAATCAGATTCCGTTCTTTGTTCTTGAATGGCTGTTTGATTACACAGTCCGCCGGAGCTCCAGCGGTTTG CTCTCGGTTCCGTTGACGGATATCGCGCTCCGATTTTTTGAATCCACGGTCAGCGGATCGCTGATGACAACTCCGACAGCAACGGGGAGAACGGAGGGCA ATTCGATTCGGATCTCGAGCAGGCAGAGTACCAAACACCTTCTCCACTTGATCCACATCAGCCAGTCGCCTAATTCCTCTATGAAAACAGAGCCAAACAG GGAGATCGGAAGCGCAGCAGGAGCATCGTCGATGTCGGAGTTCGTGCCGTCGATTGAAGAGCTGCATGCTGCGGGGATCACGATCCAGATGAGTTCGGCG AGGAAATCAATGTTCGAGGTGGAGTTCAAGGAGACGGTGTTGAAGATCCCGCAGATCCGGATCCTGGATTCCACCGACGCTCTGTTGAGGAACCTGGTGG CGTTCGAGCAGTGCTTCCATGGCTGCCAGCAGTACGTGACGTCGTATGTGGTGCTGATGAACCAGCTGGTTTACACGCTTAAGGACGTAGAGCTTTTGGA ACAGAAGGAAATCGTGGAGAACTATCTAGGGAGCAGGGAAGATGTGCCGTCTCTGTTTGATGAGATCTGCAAGCAAGCCGGACTCCAGGAATTCTATTTC GCCGGACTGTGTAGAGATTTGAATAGTTTCTACGATAGGCCATGGATTCGGTCCAAAGTGTTTCTGAAGCGAGATTATTTCACTTCGCCGTGGACGCTTG TCTCTGCGCTTGCTGTTTTCTTGATCGTCACCATGGCTGTTGTCCAGACGGTCTACACAGTTCTTTCATATTACTCCAAAAAATAA
AA sequence Show only first row Show all	>Lus10010065 pacid=23158883 polypeptide=Lus10010065 locus=Lus10010065.g ID=Lus10010065.BGIv1.0 annot-version=v1.0 MDNVPRTNAGTVEVPEPLLLRIRSGLASVLPRSSSSSIFTVPNKLRAAKPDAYTPHVLSIGPFHNGRPNLAGMQTHKWRYTLPLLARTEDAAPTMESCLK AILGFESEVRSCYAEWINLDSSQLAEILFLDGCFILELFLRYRKIEPNLKHGDLKNDPIFTTSWIISTLQRDMALLENQIPFFVLEWLFDYTVRRSSSGL LSVPLTDIALRFFESTVSGSLMTTPTATGRTEGNSIRISSRQSTKHLLHLIHISQSPNSSMKTEPNREIGSAAGASSMSEFVPSIEELHAAGITIQMSSA RKSMFEVEFKETVLKIPQIRILDSTDALLRNLVAFEQCFHGCQQYVTSYVVLMNQLVYTLKDVELLEQKEIVENYLGSREDVPSLFDEICKQAGLQEFYF AGLCRDLNSFYDRPWIRSKVFLKRDYFTSPWTLVSALAVFLIVTMAVVQTVYTVLSYYSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	0	1
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	1.0	0.9123
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	2.0	0.9045
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	2.4	0.9021
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	4.5	0.9041
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	4.7	0.9094
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	5.7	0.9059
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	7.9	0.8854
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	8.4	0.8992
					Lus10017937 [exp]	9.2	0.8807
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	9.8	0.8971

Compare expression of checked genes

Lus10010065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.