Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 437 / 8e-150 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26310 386 / 1e-129 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 386 / 1e-129 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26210 384 / 1e-128 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT4G13770 384 / 1e-128 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26330 380 / 2e-127 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 375 / 1e-125 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13080 370 / 2e-123 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G57260 368 / 1e-122 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G13110 361 / 6e-120 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004517 [exp] 843 / 0 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 727 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 640 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033172 [exp] 614 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 573 / 0 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 554 / 0 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10033173 [exp] 528 / 0 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 519 / 0 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 489 / 7e-170 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025300 [exp] 558 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 548 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 547 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 536 / 0 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 533 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 533 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 521 / 0 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 506 / 5e-177 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G184400 [exp] 398 / 3e-134 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.012G090000 [exp] 397 / 8e-134 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010066 pacid=23158897 polypeptide=Lus10010066 locus=Lus10010066.g ID=Lus10010066.BGIv1.0 annot-version=v1.0 ATGCCATACCTCATCGTCTATCTTCTCCTAGCTCTACCAATATTGGTCTCCCTATCATTTCTTCTCCACAAGAAAACCAGTCTACGAAATGCTGCATCTC TCCCGCCTGGCCCTCCCGCCCTCCCTTTCCTGGGCAACCTCCTCCACTTCGATGCCTCCGCCCCTCACCGCTACCTATGGGACCTTTCTCGTACATTCGG ACCCTTAATGTCCCTCAGACTAGGCCGCGTCCCCATCGCTGTAGTCTCGAGTGCCGAAATGGCCGAACAAGTCATGAAAACGCACGACCTTATACTCTGT AGCAGGCCTTCCATGGTCGGCCTTAAAAAGATGAGCTACAATTGCCTAGACTTGGTTTGCGCTCCCTACGGCGCTTACTGGCGAGAGATGAGGAAGGTAT GCGTCGTTCATCTCTTCAACTCCGTTAGGAGCCAGAGCTTCGCTCCGATTCGAGAGTACGAGGTTTCCAAATTGATAGACAAGATCTCCTCCTCATCGTC GTCGACCAAGCCTAGTACTTTCGACTTGTCCGAGGCTATGATGTCTCTGACAAGTACCATCACTTGTCGGATGGCTTTCGGGAAGAGGATTGATGAGAGA AGCGGATTCAAGTCTCTGCTTAATGAATCTCAGGCCATGTTTACGAGCTTCTTTTTTGAAGACTATATTCCTGCCTTTGGTTTCGTCGATAAGCTCTCCG GATTGACTCGTCGTCTCGACAAGAATTTCAAGGAGCTCGACCGATTCTATCAAGAGATAATTGATGAGCATCTTGATCCGAAACGAGGCAAGCCGGAACA AGAGGACATTCTAGATGTTCTTCTTCAGATTTTGAAGGACCCGTCGTGGTTCAAAGTACAATTGACATTCGACCACATCAAAGCAATTCTCACGGACATT TTCATAGCCGGAACAGATACAAGTGCAATAACAGTGGTATGGGTAATGACATACCTAATGAAGCACCCTATCGTGAAGACTAAAGCTCAGGAAGAAGTGA GACGAACAATTGGCAACAAGGGTTTCGTGAACGAAGAAGACATCCACCAACTATCCTACCTAAAAGCTGTGGTTAAAGAGGTACTGAGACTGCAACCCGC AGCTCCATTGTTGGTTCCAAGGGAATCGACTGAGAAATGTTGGCTAGGCGGGTATGAAATACCGGCCAAGACTATAGTCCACGTGAACGCGTGGGCCATT GGAAGGGATGTTGAAGCATGGGGAGGAGATGCAGAGGAGTTCAAGCCGGAAAGGTTCGTAGGGAAGTCTATCGATATGAAAGGCACGAACTTCAAGCTAA TACCATTCGGAGCGGGAAGAAGAATATGTCCCGGGTTGTACATGGGGATTTCGACTGTGGAGCTATCTCTAGCTAATTTAATATACGCTTTTAACTGGGA TACTCCTGCTGGAATGGAGGATGAAGTGTTGGACATGGGTGTGCTCCCCGGCATTGCCATGCACAAGAAAAATCCTCTACTCCTGTTGCCTACAAGAGTG GTTGTAGATTCCGAATCCTAA
AA sequence Show only first row Show all	>Lus10010066 pacid=23158897 polypeptide=Lus10010066 locus=Lus10010066.g ID=Lus10010066.BGIv1.0 annot-version=v1.0 MPYLIVYLLLALPILVSLSFLLHKKTSLRNAASLPPGPPALPFLGNLLHFDASAPHRYLWDLSRTFGPLMSLRLGRVPIAVVSSAEMAEQVMKTHDLILC SRPSMVGLKKMSYNCLDLVCAPYGAYWREMRKVCVVHLFNSVRSQSFAPIREYEVSKLIDKISSSSSSTKPSTFDLSEAMMSLTSTITCRMAFGKRIDER SGFKSLLNESQAMFTSFFFEDYIPAFGFVDKLSGLTRRLDKNFKELDRFYQEIIDEHLDPKRGKPEQEDILDVLLQILKDPSWFKVQLTFDHIKAILTDI FIAGTDTSAITVVWVMTYLMKHPIVKTKAQEEVRRTIGNKGFVNEEDIHQLSYLKAVVKEVLRLQPAAPLLVPRESTEKCWLGGYEIPAKTIVHVNAWAI GRDVEAWGGDAEEFKPERFVGKSIDMKGTNFKLIPFGAGRRICPGLYMGISTVELSLANLIYAFNWDTPAGMEDEVLDMGVLPGIAMHKKNPLLLLPTRV VVDSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10010066 [exp]	0	1
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10014144 [exp]	2.6	0.8842
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10009290 [exp]	3.3	0.8178
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	14.1	0.7803
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	14.7	0.8502
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	15.0	0.8488
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10005294 [exp]	20.8	0.8276
AT1G45230			Protein of unknown function (D...		Lus10006488 [exp]	24.6	0.8376
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10038925 [exp]	33.5	0.8009
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10002055 [exp]	34.5	0.7819
AT3G05410			Photosystem II reaction center...		Lus10029903 [exp]	34.6	0.8307

Compare expression of checked genes

Lus10010066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.