Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02520 1670 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G47000 1664 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G62150 1656 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02530 1601 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 1587 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 1558 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 1461 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1412 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G25960 1048 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 1048 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009989 [exp] 1934 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038050 [exp] 1878 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 1734 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1730 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 1690 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010068 [exp] 1644 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010074 [exp] 1611 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004583 [exp] 1418 / 0 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10004520 [exp] 1030 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1790 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1778 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1758 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 1733 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1716 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1706 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.010G003000 [exp] 1613 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1538 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.003G094400 [exp] 1043 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 1036 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10010067 pacid=23158901 polypeptide=Lus10010067 locus=Lus10010067.g ID=Lus10010067.BGIv1.0 annot-version=v1.0 ATGGGTGGCAAGAAAATGGAGGCAGAAGATGTATCTTCTTCAGCTGCTGAAGACAAGGGGAAGAAGAAAGTTTCTTCTGGCAACGCTACTAAAACTGTTC CATTTACAAAGCTCTTCTCGTTTGCTGATTTGAAAGATATATTATTGATGATTGTTGGGACCATTGGTGCCATTGGGAATGGTATGGCTATGCCTCTCAT GACAATTATAATGGGCCAAACTATCAATTCGTTTGGACAGAACCAGGGAAGCAAGGATCTTGTCCATGCCATTTCCAAGGTTTGTCTGAAATATGTGTAC TTGGCCATTGGAGCTGGGGTGGCCTCATTTCTCGAGGTGACTTGCTGGATGGTAACCGGAGAAAGGCAGGCAGCTAGAATAAGGAGTTTGTATTTGCAGA CAATTCTTAGACAGGACATTGCTTTCTTTGACAATGAAACAAGCACCGGAGAGGTCATTGGTAGGATGTCCGGCGACACTGTGCTCATTCAAGCTGCAAT GGGCGAGAAGGTTGGGAAGTTTCTGCAGCTGACAGCAACATTTATAGGAGGATTTACTATAGCATTTATAAAAGGATGGATGCTTGCATTGGTAATGTTG TCCGCTATTCCACTTCTGATAATTGCTGGCAGCACAATGGCTACCATCATGTCTGCGATGACTGCAAGTGGACAGCAAGCTTACGCTGATGCCGGCACTC TCGTTGAACAAACCATTGGCTCTATCAGAACTGTTGCATCATTTACTGGCGAGAAGCAAGCCGTACATGGTTACAACAAGTTTCTAGAGGTGGCATATAA AGCAGGGGTGAAGGAAGGCATAACGTCCGGAATAGGCATTGGCGTGGTAATGATGATTATCTTTTCCAGTTACGCCGTAGGTGTATGGTATGGTGGGAAG TTGATATTGCATGGTGACTATTCTGGTGGTCAAGTTATCAACGTGATTGTTGCTGTGTTAACCGCTTCCATGTCGCTTGGACAAGCAGCGACACCGATGA GTGCATTTGCTGCAGGGAAAGCTGCAGCGTACAAGATGTTTGAGACCATCGACAGACGCCCTGTGATAGATGCATCTGATCCCAAAGGAAAGACATTGGA CGGAATCTTGGGAAACATCGAGTTAAAAGATGTACATTTCTGCTACCCTGCTAGACCAGATGAACAAATATTCAGTGGTTTCTCTCTCTCGATCCCTAGT GGCACCACTGTCGCGTTGGTGGGTCACAGTGGGAGTGGCAAGTCAACTGTGATAAGCCTGATCGAGAGGTTTTACGATCCTCAGTCTGGTGAAGTTTTGA TCGACGGGATCAATCTCAAAGATTTCCAACTTAAATGGATTAGACAACAGATTGGTCTTGTGAGCCAGGAGCCTGTGTTGTTTGCTTCCAGCATCAGGGA CAACATTGCGTACGGGAAAGATGAGGCGACAAGTGAAGAAATCAAGGCTGCCACCCAACTTGCAAATGCTGCCAAATTCATAGACAAGCTGCCTCGCGGG ATCGACACTATGGTTGGTGAGCATGGGACTCAACTATCTGGTGGGCAGAAGCAGAGAATCGCCATAGCCAGGGCTATCCTGAAAAACCCTCGAATCTTGT TACTGGATGAAGCCACAAGCGCCCTGGATGCTGAGTCTGAGAGAGTTGTACAAGAGGCATTGGATAGGATCATGGTCGAAAGAACCACCGTCATAGTTGC TCATCGCTTGACCACTGTTAGGGATGCTGATGTGATTGCCGTCATTCAACAAGGAAAGATCATAGAAAAAGGTTCTCATGCAAAACTGCTAGAGGATTCT GAGGGAGCATACTCACAGCTCATACGCTTGCAAGAAGCAAAGAAAGAATTAGAACAAGAAGAAGCACCAGAAGACTCCAACAGAGGTGAAATCACTTCAA AATCATTCAGTCAGTTAGGCCAAAGAAGGTCATTTCTCCAATCGATGAGTAAAGAATCGTTCAGGAATAGCAGTAAACAGCTGTCATACTCTCTATCTTT TGGGATACCCACAAGATTTGATGTTACTGACCATAACAACTTGGAGGCATTGAAAGAAGAATTACCAAGAAAGGAAAATATTCCACAAGTCTCACTTAGC CGTTTGGCTTACCTAAACAAGCCTGAGCTCCCAGTCCTTGTGGCAGGTACAATTGCAGCATGTGTCAATGGGACAATCATGCCAATCTATGGCGTTCTAA TTTCCAAAGCCATCAAGACGTTCTTCGAAACAGCACATGAATTGAAAATCCACACTAGGTTTTGGGCACTGATGTTTATGACACTTGGGTTGGCAACATT AGTAGCATACCCGGTTATGTCCTACCTTTTTGCAGTAGCTGGGTCTAGACTGATCCAGAGGATCAGATCAATGTGCTTTGAGAAGGTGGTTCATACTGAA ATCGGTTGGTTCGATGACCCTGATCATTCAAGTGGTGCCATAGGTGCTCGGCTCTCAGCTGATGCTGCAATTGTTCGGTCTCTAGTTGGAGATGCACTTG CTGAGACAGTTCAGAATACGGCCACTGCTGTAGCTGCTTTGATCATAGCTTTCACTGCCAGTTGGCAACTAGCCTTCATTGTTGTCGCATTGCTCCCCCT CAACCTTATGAATGGATTTGCCCAAGCAAAATTCATGAGAGGTTTCAGCGCTGATGCAAAGGCCATGTACGAGGAAGCTAGCCAAGTTGCAAACGATTCG GTTGGGAGCATAAGAACTGTAGCATCCTTTTGTGCAGAAGAGAAAGTGATGAGACTTTACCGGAAAAAATGTGAAGGACCAATGAAAAGTGGGGTGAAGC AAGGACTTATAAGTGGAGTTGGACTAGGGATGTCTTCATTTTTTCTGTTTTGTTTCTATGCAATCAGTTTCTATGCTGGAGCTAAACTAGTTGCTAAAGG AGATGCAACATTTAGAGATGTTTTTCAAGTGTTCTTCGCTCTGACTATGGCATCCCTTGGTGTTGCTAATTCAGGAAGTGGAGCTGATTCCTCAAAGGGA AAAGCAGCTGTAGCTTCTGTGTTCTCAATTATAGATAAGAAGTCACTTATCGACTCGAGTGATGAATCAGGAACGATACTAGACAATTTGCAAGGAGAAA TTGAACTTGTTCATTTGAGTTTCAAGTACCCTTCTAGACCAGATGTTCAGATTTTCAGAGACATCAACTTGACCATTCATTCTGGGAAGACTGTCGCCTT GGTGGGAGAAAGCGGAAGCGGGAAGTCAACAATAATTGCATTGCTGCAAAGGTTTTATGATCCGGACTCAGGTCATATCACATTGGACGGTATAGAAATC AACAAGCTGCAGTTGAAATGGCTGAGAAAGCAAATGGGTCTGGTGGGGCAAGAACCCTCATTGTTCAACGACACAATCAGAGCAAACATTGCATATGGGA AAGAAGGGAATGCAAGTGAGGCAGAGATCATAGCTGCATCAAAGCTGGCCAATGCACACAGATTCATCAGCGGATTACAACACGGCTATGATACGATTGT TGGGGAGCGTGGAATCCAGTTGTCAGGAGGACAGAAGCAAAGGGTAGCCATTGCTCGAGCAATCGTGAAAGAACCAAAGATATTGCTGTTGGACGAGGCA ACCAGTGCGCTTGATGCCGAGTCTGAAAGAGTGGTACAGGATGCATTGGATCAAGTGATGGTGAACAGAACAACGATCGTGGTAGCTCACCGACTTTCGA CTGTTAAGAATGCAGATCTGATCGCAGTGGTGAAAAATGGAGAGATTGTAGAAAAGGGTAAGCATGGAATATTGATGAATCTTAGAGATGGTGTCTACGC TTCATTGCTGGCTCTTCATAAAACTGCTACAACTTCTTAG
AA sequence Show only first row Show all	>Lus10010067 pacid=23158901 polypeptide=Lus10010067 locus=Lus10010067.g ID=Lus10010067.BGIv1.0 annot-version=v1.0 MGGKKMEAEDVSSSAAEDKGKKKVSSGNATKTVPFTKLFSFADLKDILLMIVGTIGAIGNGMAMPLMTIIMGQTINSFGQNQGSKDLVHAISKVCLKYVY LAIGAGVASFLEVTCWMVTGERQAARIRSLYLQTILRQDIAFFDNETSTGEVIGRMSGDTVLIQAAMGEKVGKFLQLTATFIGGFTIAFIKGWMLALVML SAIPLLIIAGSTMATIMSAMTASGQQAYADAGTLVEQTIGSIRTVASFTGEKQAVHGYNKFLEVAYKAGVKEGITSGIGIGVVMMIIFSSYAVGVWYGGK LILHGDYSGGQVINVIVAVLTASMSLGQAATPMSAFAAGKAAAYKMFETIDRRPVIDASDPKGKTLDGILGNIELKDVHFCYPARPDEQIFSGFSLSIPS GTTVALVGHSGSGKSTVISLIERFYDPQSGEVLIDGINLKDFQLKWIRQQIGLVSQEPVLFASSIRDNIAYGKDEATSEEIKAATQLANAAKFIDKLPRG IDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVERTTVIVAHRLTTVRDADVIAVIQQGKIIEKGSHAKLLEDS EGAYSQLIRLQEAKKELEQEEAPEDSNRGEITSKSFSQLGQRRSFLQSMSKESFRNSSKQLSYSLSFGIPTRFDVTDHNNLEALKEELPRKENIPQVSLS RLAYLNKPELPVLVAGTIAACVNGTIMPIYGVLISKAIKTFFETAHELKIHTRFWALMFMTLGLATLVAYPVMSYLFAVAGSRLIQRIRSMCFEKVVHTE IGWFDDPDHSSGAIGARLSADAAIVRSLVGDALAETVQNTATAVAALIIAFTASWQLAFIVVALLPLNLMNGFAQAKFMRGFSADAKAMYEEASQVANDS VGSIRTVASFCAEEKVMRLYRKKCEGPMKSGVKQGLISGVGLGMSSFFLFCFYAISFYAGAKLVAKGDATFRDVFQVFFALTMASLGVANSGSGADSSKG KAAVASVFSIIDKKSLIDSSDESGTILDNLQGEIELVHLSFKYPSRPDVQIFRDINLTIHSGKTVALVGESGSGKSTIIALLQRFYDPDSGHITLDGIEI NKLQLKWLRKQMGLVGQEPSLFNDTIRANIAYGKEGNASEAEIIAASKLANAHRFISGLQHGYDTIVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEA TSALDAESERVVQDALDQVMVNRTTIVVAHRLSTVKNADLIAVVKNGEIVEKGKHGILMNLRDGVYASLLALHKTATTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	0	1
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	1.0	0.9755
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002703 [exp]	1.4	0.9562
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	1.7	0.9507
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	3.0	0.9454
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	3.5	0.9488
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	4.4	0.9320
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	5.3	0.9377
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	5.4	0.9244
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	5.5	0.9480
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	7.0	0.9468

Compare expression of checked genes

Lus10010067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.