Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1723 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT1G02520 1707 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G18050 1510 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 1474 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G10680 993 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28390 919 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT2G47000 896 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02530 872 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 866 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 849 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009988 [exp] 1951 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1946 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009989 [exp] 1632 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 1632 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 1567 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010074 [exp] 1494 / 0 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004520 [exp] 1473 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10024162 [exp] 882 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 880 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1829 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1791 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1782 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 1712 / 0 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1698 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G085000 [exp] 922 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113100 [exp] 914 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.001G354900 [exp] 829 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.010G003000 [exp] 823 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.003G094400 [exp] 570 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10010068 pacid=23158884 polypeptide=Lus10010068 locus=Lus10010068.g ID=Lus10010068.BGIv1.0 annot-version=v1.0 ATGGTGAATGACGGTAATGGTAAAAGTAAGGAGCCATCAGCAAGAGTGGCATTCCATAAGCTGTTCTGGTTTGCAGATAAGGTGGATGTTGCGCTGATGA TACTCGGAACAGTTGGTGCTGTTGGAAACGGTGTGTCTATTCCTTACCTTACCGTTCTCTTTGGGAACCTCACCGATTCCTTTGGACAGAATCAGTCCAG CTCCGACGTCGTCCGTTCAGTCTCTAAGGTATCTCTTCAGTTCGTGTACTTGGCAGTGGGTACAGCTGGGCTAGCTTTTCTACAGGTTACTTGCTGGATG GTGACAGGGGAGAGACAAGCAACAAGGATTAGGGGTTTGTATTTGAAAACCATATTAAGACAAGACATTTCCTTCTTCGACAAGGAAACCAACACCGGAG AGGTTATCGGTAGAATGTCCGGCGACACTGTTCTTATTCAGGATGCCATGGGTGAAAAGGTTGGGAAGTTCCTTCAGCTGATTGCAACATTCTTTGGAGG GTTTGTGATAGCATTCATGAAAGGATGGCTTCTCACCCTTGTCATGCTAACCACAATCCCATTGATTGTTGTTATCGGTTCTCTGAGTTCCCTGATGGTA GCTACGATGGCAACTCGAGGACAAACAGCGTATGCCAAAGCAGCAAACGTAGTCGAGCAGACCATTGGATCGATACGAATAGTCGCGTCTTTTACAGGGG AGAATCAAGCCATAGAGAGTTACAAGAAGCACCTTGTGACTGCTTACAAATCCGGCACCAGAGAAGGATTGGCTAATGGATTCGGACTCGGGCTCCTTAC GATGATCATGTTCTGTAGTTATGCTCTGGCCATATGGTTCGGTGGGAAGATGATTCTGGAGAAAGGATACACTGGTGGTCAAATTCTTAACGTCCTTGTT GCTGTCTTGTCCGGTTCCATGTCACTTGGGCAGGCTTCTCCATGCACGACAGCTTTTGCAGCAGGTCGGGCAGCAGCTTACAAAATGTTCGAGACAATCA ACAGGAAGCCGGATATCGATGCTTATGACTCGAGGGGGAAAGTATTGGAAGATGTTCGAGGCGACATTGAGTTGAGAGATGTGTGCTTCAGCTATCCAGC AAGACCAGATGAGCAGATATTCAGTGGGTTCTCCCTCTTCATAGAGAGTGGGACAACTGCAGCTTTAGTTGGTCAGAGTGGAAGTGGGAAGTCAACAGTG ATCAGTTTGGTAGAGAGGTTTTATGATCCACAAGCTGGTGAAGTTCTCATTGATGGGATTAACCTCAAGGAGTTCCATCTTAAATGGATCCGAGGCAAAA TCGGGCTTGTTAGCCAGGAACCTGCATTGTTCACATCAAGCATCAAGGAAAACATAGCGTATGGTAAAGAAGGTGCAACCATTGATGAGATTAGAGCTGC TACTGAGCTTGCTAATGCTGCTAAGTTCATTGATAAACTACCTCAGGGGCTAGACACCATGGTTGGAGAGCATGGAACTCAACTGTCAGGTGGACAGAAG CAGAGAATAGCAATAGCAAGGGCAATCCTGAAGAATCCAAGAATATTACTTTTAGATGAAGCGACAAGTGCACTTGATGCAGAATCAGAAAAAGTTGTTC AGGAGGCATTGGACAGGATCATGGTCAGCAGAACTACTGTAATTGTTGCTCATCGTTTGAGCACTGTTAAGAACGCTGATATGATCGCTGTCATTCATCG TGGAAAGATTGTTGAAAAGGGCTCTCACTCCGAGCTTCTGGAGGATCCAGAAGGAGCATATTCACAGCTTATTCGTTTGCAAGAAATAAACAAAGGGTCG GGAGATGAACATCACAAAGCATCAGAGATCAATCAAGAGGAGTCCTTTAGAAGACAGTCTAGTCAAAGGAATTCGTTTCAAAGATGTCTCAGCCGAGGCA ACAGCAGCCGATCTTTCTCAGCCTCATTTGGACTCCCAACTGTGATCAACGTCACTGGTAGTAATGCTGTGGAAGATGCTGCTGCAGAAGCTTCTTCTCC ACCACCAGTGAAGGATGCTCGAAACGTGTCCATCAAGCGACTGGCGTATCTCAACAAGCCAGAGATTCCTGTGCTGTTGGTTGGAACCGTTGCAGCTGTA GGAAATGGTGTTTTGTTCCCCATCTTCGGTATCTTAATCTCGCGAGCCATGAAGTCATTCTACGAGCCGCCTAATGAGTTGAGCAGGGACTCAAAGTACT GGGCTTTAATGTTCTCCGCCCTTGGCCTTGCTGCATTACTGATATGTCCAGCCCAGACTTACTTCTTTAGTGTAGCTGGATGTAGGTTGATCCAGAGGAT CAGATCCATTTGCTTTGAGAAAGTTGTACGCATGGAAGTGAGCTGGTTCGATGAACCTGAAAACTCGAGTGGCGGGATTGGTGCTAGGCTCTCCGCGGAT GCAGCAACAGTTCGTCTTCTGGTTGGCGACAAACTTGGTCAAACAGTTCAAAACATTGCTTCTCTAGTTGCCGGATTGGCCGGATTGGTGATTGCCTTCA GTGCTAGTTGGGAACTAGCCTTGATTATACTTGCACTAGTTCCATTAATAGGATTAAATGGGTATCTTGAACTCGAGTTCATGAAAGGATTCAGTGCAGA TGCAAAGATGATGTATGAAAAGGCGAGCCAAGTTGCGAGTGATGCAGTTGGGAGCATTAGAACAGTTGCATCATTCTGTGCAGAAGAGAAGGTGATGGAA CTGTATAGAAAGAAATGTGAAGGACCCAGAAAGACAGGAATTAGGGCAGGTCTAATCAGTGGAACTGGTTTTGGAGTGTCATACTTTTTGCTGTATTGTT TCTATGCAACCAGCTTTTATGCAGGTGCTCAGCTTGTTAAACATCACAGAGCTACATTCGCTGATGTTTTCCAGGTTTTCTTTGCTCTCGCATTGGCAGC TGTTGGATTATCTCAGTCAAGCTCCTTTGGACCTGATGCCTCCAAGGCCAAAACTGCAGTTGCTTCCATTTTCTCAATAGTAGATAGGGAATCGAAGATA GATCCGAATAACGAATCAGGAGCAACATTAGACACTGTGAAAGGAGACATTGAACTCAGACACATAAGCTTTCGCTACCCTTCTAGGCCTGATGTTCAAG TTTTTAGGGACCTCAGCTTGGCTATTCATTCTGGCCAGACTGTTGCTCTAGTTGGAGAGAGTGGGAGTGGGAAATCCACAGTTATTGCTTTGCTGCAAAG GTTTTATGATCCTGATTCAGGTAGGATAACTCTTGATGACGTGGAAATCCAGACCATGAAGATCAAGTGGCTTAGACAGCAGATGGGACTTGTGAGCCAA GAACCAGTTTTGTTCAACGACACGATTCGAGCCAACATTGCTTATGGGAAGCAAGGAGATGCAACCGAGAACGAAATCGTGTCAGCATCAGGCCTAGCAA ATGCACACAAGTTCATCAGTAGCCTACAACAGGGATATGATACGATGGTAGGGGAGCGAGGAGTGCAACTATCCGGTGGCCAAAAGCAACGTGTAGCCAT TGCTCGCGCCATCGTTAAAGATCCAAAGATATTGCTGCTAGATGAGGCGACCAGCGCTTTGGATGCAGAATCGGAGAAAGTGGTGCAAGACGCATTAGAC AGAGTGATGGTGAACAGGACGACAGTGGTGGTGGCTCATCGACTATCGACAATCAAGAATGCAGATGTGATTGCGGTGGTGAAAAATGGAATGATTGCTG AGAAAGGAAGGCATGAAAGTTTGATGAATAAAGATGGTGTTTATGCATCCCTTGTGGCGCTTCACACCAGTGCATCCATTACTTAG
AA sequence Show only first row Show all	>Lus10010068 pacid=23158884 polypeptide=Lus10010068 locus=Lus10010068.g ID=Lus10010068.BGIv1.0 annot-version=v1.0 MVNDGNGKSKEPSARVAFHKLFWFADKVDVALMILGTVGAVGNGVSIPYLTVLFGNLTDSFGQNQSSSDVVRSVSKVSLQFVYLAVGTAGLAFLQVTCWM VTGERQATRIRGLYLKTILRQDISFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFFGGFVIAFMKGWLLTLVMLTTIPLIVVIGSLSSLMV ATMATRGQTAYAKAANVVEQTIGSIRIVASFTGENQAIESYKKHLVTAYKSGTREGLANGFGLGLLTMIMFCSYALAIWFGGKMILEKGYTGGQILNVLV AVLSGSMSLGQASPCTTAFAAGRAAAYKMFETINRKPDIDAYDSRGKVLEDVRGDIELRDVCFSYPARPDEQIFSGFSLFIESGTTAALVGQSGSGKSTV ISLVERFYDPQAGEVLIDGINLKEFHLKWIRGKIGLVSQEPALFTSSIKENIAYGKEGATIDEIRAATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQK QRIAIARAILKNPRILLLDEATSALDAESEKVVQEALDRIMVSRTTVIVAHRLSTVKNADMIAVIHRGKIVEKGSHSELLEDPEGAYSQLIRLQEINKGS GDEHHKASEINQEESFRRQSSQRNSFQRCLSRGNSSRSFSASFGLPTVINVTGSNAVEDAAAEASSPPPVKDARNVSIKRLAYLNKPEIPVLLVGTVAAV GNGVLFPIFGILISRAMKSFYEPPNELSRDSKYWALMFSALGLAALLICPAQTYFFSVAGCRLIQRIRSICFEKVVRMEVSWFDEPENSSGGIGARLSAD AATVRLLVGDKLGQTVQNIASLVAGLAGLVIAFSASWELALIILALVPLIGLNGYLELEFMKGFSADAKMMYEKASQVASDAVGSIRTVASFCAEEKVME LYRKKCEGPRKTGIRAGLISGTGFGVSYFLLYCFYATSFYAGAQLVKHHRATFADVFQVFFALALAAVGLSQSSSFGPDASKAKTAVASIFSIVDRESKI DPNNESGATLDTVKGDIELRHISFRYPSRPDVQVFRDLSLAIHSGQTVALVGESGSGKSTVIALLQRFYDPDSGRITLDDVEIQTMKIKWLRQQMGLVSQ EPVLFNDTIRANIAYGKQGDATENEIVSASGLANAHKFISSLQQGYDTMVGERGVQLSGGQKQRVAIARAIVKDPKILLLDEATSALDAESEKVVQDALD RVMVNRTTVVVAHRLSTIKNADVIAVVKNGMIAEKGRHESLMNKDGVYASLVALHTSASIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10010068 [exp]	0	1
					Lus10002764 [exp]	2.4	0.9450
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	8.6	0.9119
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10030709 [exp]	11.5	0.9107
					Lus10006417 [exp]	13.3	0.9060
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	15.3	0.9021
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10002108 [exp]	15.8	0.8489
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	16.2	0.8554
AT1G33970			P-loop containing nucleoside t...		Lus10009482 [exp]	17.9	0.8579
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	18.3	0.8837
AT1G15260			unknown protein		Lus10011448 [exp]	21.6	0.8838

Compare expression of checked genes

Lus10010068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.