Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 779 / 0 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 635 / 0 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004521 [exp] 1407 / 0 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1) Lus10038048 [exp] 866 / 0 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10009987 [exp] 824 / 0 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114900 [exp] 964 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1) Potri.002G189700 [exp] 948 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.013G004200 [exp] 605 / 0 AT3G62240 501 / 3e-166 RING/U-box superfamily protein (.1) Potri.005G004600 [exp] 412 / 2e-132 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010069 pacid=23158855 polypeptide=Lus10010069 locus=Lus10010069.g ID=Lus10010069.BGIv1.0 annot-version=v1.0 ATGGATGATAGTTGTGCTGTTTGCGCTGATTCCTTGGAATGGGTCAGTTATGGTGCTTGTGGCCATCGCGAGGTCTGCTCTACCTGCGTCGCTCGCCTCC GTTTCATCATCGAGGATCGACGATGCTGCATCTGCAAGGCGGAATCCGATGTTGTCTTTGTCACCAAGGCTCTTGGAGACTATACGAGGATGATTAATGA CTTTTCAGTATTGCCATCTGAACCAAGGGAGGGTCGGGTTGGGTCATATTGGTATCATGAGGATACCCAGGCATTTTTTGACGACGTGGAACACTACAAG ATGGTTAAGGCAATGTGCAAACTCTCATGCAGTGTATGCGACAAGGCGGAGGATGAGACTAACGATGGTGCCAAAAGGCGCTCCAAGTTTAGGAACATTG AGCATCTGAAGGGTCATTTGTTTCACAAACATAAATTGGTTATGTGTAGCCTATGTTTGGAAGGGAGGAAGGTATTTATTTGTGAGCAAAAGCTATATAC TAGATCACAGCTTAGTCAGCACATCAGCACAGGGGACTCTGAGGTTGATGGTAGTGAAAGTGAAAGAGGCGGGTTTAGGGGTCATCCCATGTGTGAATTT TGCAAGACTCCATTCTATGGCGAAAATGAGTTGTACTCCCATATGTCCAGAGATCACTACACCTGCCATATATGCCAAAGGCAGCACCCTGGACAATATG TATATTATAAAAACTACCAGGACCTAGAAATGCACTTTCGTCATGATCATCTTCTCTGTGAGGATGAGTCGTGCCTTGCCAAAAAGTTTGTTGTTTTTCA AAGTGAAGCAGAATTAAAGAGGCATAATACCATTGAACATGGTGGCCGGATGTCCCGTTCGAAGCGTAATGCTGCTCTACAGGCATCTCATGACATAAGC CGTTTATTGCATTTTCAGATACCAACAAGCTTTAGGTTTCACCGTGAACAAGATCCTCGTCGTGGAAGGGGACGTACATCTCGGCGTGATGAACCTGATA ATCAGCTTTCTATGGAAATACAAGCAAGTATGGATGCTTCCTTCCCTAGAGGAACGTCTCATGACCCCCCATTGCCATCATCTGGTACCCAAGTTACGGA TCTTGGTTATGATATGGATCCAGACGTTCAGTCTTTAGAATCATTAGCTTTAACAGAATCTACCCCTTCAAGGTATCTTCAAGCCTTAGGGCACAGTTCT AGGAATGGAGCTTTGCAAGAATCCGCCTTTCCTCCACTTGCTATGATTCCTAGTAGTAGCCAGCAGAAGCCCACACAAGAACCAGAAGGGTTACCAAATA CGACTATGGCAACTCATCTCAGACGCAAGAACAATAAGGTTACTGTTATTAGCTCACCCCAGGGATGGGCGACAAGTAATGGCCCTGTTTCCAGTAGTTC TACACAGTGGCCTGCCATAAATACTGCACCGTCAATCTCACAGAGTACTGACAGTGCTCCTTCAGTTTCCAGTCATGCAAGTCCTCCTGTTCGACCAGGG CATGCTCCTGGTCCTCCTGGACATCAAGGGAGTTCTACACAGTGGCCTGCCATAAATAATGCACCATCAATCCCACACAGTACTTTCAGTTCTCCTTCAG TTTCCATAGTGCATGCTCCTGGAAATCAAGGGAGAACCAGTAGAATGAGTCATTCTGCATCAGCTCCAAGTCTTGCTGAGAGTAGACTATCAAAGCCAAC CGTTTCAGATTTCCCACCAGTTTCAGCAACACAAGTACGGAAAACAACCCCTGCTGTGCAAGTTGTGCCAAATGTTGAAGACGTTCAAACTGCAAACAGG TCTTTGGTTGAAAAAATTCGTGATGCCCTTCAGCATGACGAGGCTAAGTATGCTTCTTTCAAAGAAATCTCTGGTCAGTATCGTCAGGGTTCCATTAGCA CTCCAAGGTACTTGGATAACGTGAGGCAGTTTGGATTGTCGCATCTTGTTATCGATCTGGCTAGTCTATGTCCTGATCCTCAGAAGCGCCAGGAGTTAGT TGGCACCTATTTCGATAGTTTGGAGAGTAACGGCCAGCAGGAAAAGGTTGGTGGCCGCCGGGAAACCCAATTGCAGGAGAGTAAAGGTAAAAAGGGCAAG GGGATAGCTACTGAAGGCAGTAGCTCAAGGGACAGATTGGCCGACAATATTATCAGCACTGTTAGGACACTACAGTCAAACCACAAGCCTCAGGAGGAAG AGGTTGAGGTGTTGTCCAAGGATGGTTACCGGAATTCGAAAGGCAATTTAGTGGCTGATCAACGAAGTTCCAAGCAGGGGGGTCAACGTGACTCTACATC TGGTGATGTATCCAAGTATAAGAAGAAAACTCCAAAGTTCCTCAGAGCGAGACTGGGTGATGGGTCAATGGCGGCGATGTTAGACACGAGAGATTCTGAA CCAGACCTGGATCCAGGTTCCCTTTCTGAAACATCAGATAGTAATGGTTTGCCTGTTCGCGGGGTGTGGCGAAAGGGAGGAAGTAAGAAACTGTTTGCTT AA
AA sequence Show only first row Show all	>Lus10010069 pacid=23158855 polypeptide=Lus10010069 locus=Lus10010069.g ID=Lus10010069.BGIv1.0 annot-version=v1.0 MDDSCAVCADSLEWVSYGACGHREVCSTCVARLRFIIEDRRCCICKAESDVVFVTKALGDYTRMINDFSVLPSEPREGRVGSYWYHEDTQAFFDDVEHYK MVKAMCKLSCSVCDKAEDETNDGAKRRSKFRNIEHLKGHLFHKHKLVMCSLCLEGRKVFICEQKLYTRSQLSQHISTGDSEVDGSESERGGFRGHPMCEF CKTPFYGENELYSHMSRDHYTCHICQRQHPGQYVYYKNYQDLEMHFRHDHLLCEDESCLAKKFVVFQSEAELKRHNTIEHGGRMSRSKRNAALQASHDIS RLLHFQIPTSFRFHREQDPRRGRGRTSRRDEPDNQLSMEIQASMDASFPRGTSHDPPLPSSGTQVTDLGYDMDPDVQSLESLALTESTPSRYLQALGHSS RNGALQESAFPPLAMIPSSSQQKPTQEPEGLPNTTMATHLRRKNNKVTVISSPQGWATSNGPVSSSSTQWPAINTAPSISQSTDSAPSVSSHASPPVRPG HAPGPPGHQGSSTQWPAINNAPSIPHSTFSSPSVSIVHAPGNQGRTSRMSHSASAPSLAESRLSKPTVSDFPPVSATQVRKTTPAVQVVPNVEDVQTANR SLVEKIRDALQHDEAKYASFKEISGQYRQGSISTPRYLDNVRQFGLSHLVIDLASLCPDPQKRQELVGTYFDSLESNGQQEKVGGRRETQLQESKGKKGK GIATEGSSSRDRLADNIISTVRTLQSNHKPQEEEVEVLSKDGYRNSKGNLVADQRSSKQGGQRDSTSGDVSKYKKKTPKFLRARLGDGSMAAMLDTRDSE PDLDPGSLSETSDSNGLPVRGVWRKGGSKKLFA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10010069 [exp]	0	1
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	4.8	0.8672
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	11.8	0.8559
AT5G07400	FHA		forkhead-associated domain-con...		Lus10043015 [exp]	15.1	0.7552
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	19.1	0.8455
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	20.2	0.8443
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	21.4	0.8278
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	29.9	0.8185
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10010493 [exp]	37.9	0.8427
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	38.5	0.7880
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	38.7	0.8257

Compare expression of checked genes

Lus10010069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.