Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01850 734 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT3G17390 733 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT1G02500 731 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) AT2G36880 704 / 0 MAT3 methionine adenosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004522 [exp] 775 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10009985 [exp] 763 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10038044 [exp] 760 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10013828 [exp] 702 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10023007 [exp] 696 / 0 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 696 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10026541 [exp] 471 / 1e-167 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G189200 [exp] 748 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.014G114700 [exp] 747 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.008G099300 [exp] 742 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.013G004100 [exp] 739 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 739 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.006G123200 [exp] 700 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010070 pacid=23158856 polypeptide=Lus10010070 locus=Lus10010070.g ID=Lus10010070.BGIv1.0 annot-version=v1.0 ATGGAGACCTTCCTATTTACATCTGAGTCTGTGAACGAGGGACACCCAGACAAGCTCTGCGATCAGATCTCTGATGCAGTCCTCGACGCTTGCCTCCAGC AAGACCCTGACAGCAAGGTTGCATGCGAGACATGCACCAAGACCAACATGGTCATGGTTTTCGGCGAGATCACCACCAAGGCCAAGGTCGACTACGAGAA GATCGTCCGTGACACCTGCCGCAACATCGGCTTCGTCTCCGATGATGTGGGACTTGATGCTGACAACTGCAAGGTCCTGGTCAACATCGAGCAGCAGAGC CCCGACATTGCTCAGGGTGTCCATGGCCACTTCACCAAGCGCCCTGAAGAGATCGGTGCTGGTGACCAAGGTCACATGTTTGGGTATGCTACTGATGAGA CACCCGAGTTCATGCCTTTGACCCATGTCCTAGCTACCAAGCTCGGAGCTAAACTCACTGAGGTCAGGAAGAACGGCACCTGCCCCTGGTTAAGACCCGA TGGCAAGACCCAGGTCACTGTTGAGTACTTCAACGAGAACGGTGCCATGGTTCCTGTCCGTGTCCACACTGTCCTTATCTCGACCCAGCATGATGAGACG GTGACCAACGATGAAATCGCTGCTGACCTTAAGGAGCATGTGATCAAGCCTGTGATCCCAGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTGAACC CATCGGGTCGATTCGTGATTGGAGGCCCCCACGGTGATGCAGGGCTCACCGGCCGCAAGATCATCATTGACACCTATGGTGGATGGGGTGCCCACGGAGG AGGTGCTTTCTCAGGGAAGGACCCGACCAAGGTGGACAGGAGTGGTGCGTACATTGTGAGGCAGGCAGCCAAGAGCATTGTCGCCAATGGGCTAGCGCGT AGGTGCATTGTGCAGGTGTCGTATGCTATCGGTGTGCCTGAGCCGTTGTCTGTGTTTGTGGACTCTTATGGAACTGGGAAGATCCCGGACAAGGAGATAC TGAGCATTGTGAAGGAGACGTTTGACTTCAGGCCGGGGATGATGACGATCAACCTGGATCTGAAGAGGGGTGGGAATGGAAGGTACCTGAAGACTGCAGC GTACGGGCATTTCGGAAGGGACGACCCAGACTTCACCTGGGAGGTTGTGAAGCCGCTCAAGGCTGCTGACAAGCCCCAAGCTTAA
AA sequence Show only first row Show all	>Lus10010070 pacid=23158856 polypeptide=Lus10010070 locus=Lus10010070.g ID=Lus10010070.BGIv1.0 annot-version=v1.0 METFLFTSESVNEGHPDKLCDQISDAVLDACLQQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQS PDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPEFMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTVEYFNENGAMVPVRVHTVLISTQHDET VTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILSIVKETFDFRPGMMTINLDLKRGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKAADKPQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	1.0	0.9781
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	3.2	0.9570
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005504 [exp]	4.2	0.9361
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	4.5	0.9490
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	4.6	0.9497
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	5.5	0.9402
AT5G67540			Arabinanase/levansucrase/inver...		Lus10019280 [exp]	5.7	0.9337
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	6.9	0.8940
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	6.9	0.9297
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	9.2	0.9338

Compare expression of checked genes

Lus10010070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.