Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62220 588 / 0 Protein kinase superfamily protein (.1) AT2G47060 582 / 0 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G17410 541 / 0 Protein kinase superfamily protein (.1) AT1G48210 529 / 0 Protein kinase superfamily protein (.1.2) AT3G59350 481 / 3e-171 Protein kinase superfamily protein (.1.2.3) AT1G06700 474 / 1e-168 Protein kinase superfamily protein (.1.2) AT2G43230 476 / 2e-168 Protein kinase superfamily protein (.1.2) AT2G30740 471 / 2e-167 Protein kinase superfamily protein (.1) AT2G41970 468 / 4e-166 Protein kinase superfamily protein (.1) AT1G48220 464 / 2e-164 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004524 [exp] 723 / 0 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 685 / 0 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 679 / 0 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10026706 [exp] 489 / 2e-174 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 489 / 4e-174 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 488 / 6e-173 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025498 [exp] 488 / 9e-173 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10029295 [exp] 466 / 2e-165 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 466 / 5e-165 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G188600 [exp] 652 / 0 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 634 / 0 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 506 / 0 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.007G124000 [exp] 492 / 2e-175 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G036300 [exp] 493 / 5e-175 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G059600 [exp] 480 / 1e-170 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 471 / 4e-167 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 274 / 8e-86 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 270 / 9e-84 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 269 / 9e-84 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10010072 pacid=23158886 polypeptide=Lus10010072 locus=Lus10010072.g ID=Lus10010072.BGIv1.0 annot-version=v1.0 ATGAGCTGCTTCAGCTGTTGTGAAGAAGATGAGATCCATAAAACTGCAGACAGCGGCGGTCAATATCCCTTAAAGAGTTCCGGAGGAAATATGGGAGGGC AATATGCCTCAGAAGCAGCACCAAAAGGTGCTCAAGTTATCAAAATCCAGCCCATTGAAGTGCCCGCATTACCATTAGATGAACTGAAGGAAGTCACAGA GAACTTTGGGACTAATTCTTTGATTGGGGAAGGCTCTTATGGAAGAGTGTATTATGGAACTCTCAAGACTGGCCAAGCTGCAGCAATTAAAAAGCTGGAT TCCAGCAAGCAGCCAGATGATGAATTTCTAGCTCAGGTCTCGATGGTCTCAAGGCTTAAACATGAATACTTTGTCCAATTGCTCGGGTATTGTGTTGAAG GTGGTTCTCGTGTTCTTGCCTATGAATTTGCATCTAATGGATCACTTCATGATATTCTTCATGGAAGGAAAGGTGTTAAAGGCGCACAACCGGGTCCGGT CCTTACATGGGCTCAGCGTGTTAAAATAGCTGTTGGGGCTGCAAAGGGTCTTGAATATTTGCATGAGAAGGCTGACCCGCACATCATCCATCGTGACATT AAGTCCAGTAATGTCTTGATCTTCGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCAGCACGGCTTCACTCTA CTCGTGTACTGGGCACATTTGGCTATCATGCTCCTGAATATGCCATGACAGGGCAGTTAAATGCCAAGAGTGACGTGTATAGTTTTGGAGTCGTGCTTCT TGAGCTGTTGACTGGTCGTAAACCAGTCGATCACACATTGCCGCGTGGACAGCAAAGTCTGGTCACATGGGCTACGCCTAAATTGAGTGAGGACAAGGTT AGACAATGCGTTGATACAAGACTAGGAGGAGAGTACCCACCAAAAGCGGTAGCAAAGATGGCTGCAGTAGCTGCCTTGTGTGTGCAATACGAAGCGGATT TCAGGCCTAACATGAGCATCGTGGTGAAAGCGCTACAACCTCTACTAAACGCGAGGGCTGGACCTGCAGGTGAAACACCAAACGTCTGA
AA sequence Show only first row Show all	>Lus10010072 pacid=23158886 polypeptide=Lus10010072 locus=Lus10010072.g ID=Lus10010072.BGIv1.0 annot-version=v1.0 MSCFSCCEEDEIHKTADSGGQYPLKSSGGNMGGQYASEAAPKGAQVIKIQPIEVPALPLDELKEVTENFGTNSLIGEGSYGRVYYGTLKTGQAAAIKKLD SSKQPDDEFLAQVSMVSRLKHEYFVQLLGYCVEGGSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDI KSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKV RQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARAGPAGETPNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	2.6	0.8029
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	4.7	0.7879
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10042831 [exp]	7.7	0.7305
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	8.4	0.7378
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	10.1	0.7625
AT5G50000			Protein kinase superfamily pro...		Lus10002368 [exp]	11.5	0.7146
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	13.0	0.7477
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	13.6	0.7526
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	16.9	0.7213
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	17.9	0.7194

Compare expression of checked genes

Lus10010072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.