Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49920 155 / 3e-39 MuDR family transposase (.1) AT1G64260 153 / 1e-38 MuDR family transposase (.1) AT1G64255 111 / 3e-25 MuDR family transposase (.1) AT3G22170 62 / 1e-09 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 54 / 4e-07 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G48240 51 / 6e-07 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G35050 53 / 8e-07 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 52 / 2e-06 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 49 / 3e-06 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT3G24715 51 / 4e-06 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038037 [exp] 974 / 0 AT1G64260 149 / 8e-38 MuDR family transposase (.1) Lus10022759 [exp] 107 / 2e-27 AT1G70640 49 / 3e-08 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) Lus10038115 [exp] 105 / 1e-26 AT1G70640 45 / 3e-06 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) Lus10008047 [exp] 105 / 2e-26 AT1G70640 43 / 2e-05 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) Lus10034643 [exp] 55 / 1e-07 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10031825 [exp] 55 / 2e-07 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10037350 [exp] 53 / 5e-07 AT5G49920 197 / 8e-61 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10031173 [exp] 52 / 2e-06 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 51 / 2e-06 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020700 [exp] 69 / 1e-11 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.003G110300 [exp] 62 / 1e-09 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 58 / 3e-08 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.016G018300 [exp] 57 / 6e-08 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.T171101 [exp] 52 / 1e-06 AT1G10240 789 / 0.0 FAR1-related sequence 11 (.1) Potri.008G108800 [exp] 52 / 2e-06 AT1G10240 788 / 0.0 FAR1-related sequence 11 (.1) Potri.015G139300 [exp] 51 / 3e-06 AT4G38180 359 / 1e-112 FAR1-related sequence 5 (.1) Potri.007G069500 [exp] 50 / 5e-06 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.003G031200 [exp] 49 / 1e-05 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.005G095200 [exp] 49 / 1e-05 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03108 [flax] [poplar] DBD_Tnp_Mut MuDR family transposase CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain CL0072 [flax] [poplar] PF04434 [flax] [poplar] SWIM SWIM zinc finger CL0219 [flax] [poplar] RNase_H PF10551 [flax] [poplar] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Lus10010073 pacid=23158871 polypeptide=Lus10010073 locus=Lus10010073.g ID=Lus10010073.BGIv1.0 annot-version=v1.0 ATGTCCAAGTTGATTGTAATATGCCAGTCCGGAGGCAAGTTTGCCCCCGCTGATGATGGAGGTCTCTCGTACTCCGGCGGGGAAGCTCATGCTCTGAGCA TCAGCCGGGATAGCAAATTCGATGATTTGAAGGCGGAGTTGGCTGAGTTTTGGAAGTATGATCCGAATGCCATTACCGTCAAGTACTTCGTTCCAAATAA TAACAAGACTCTCATCACCGTGTCATCCGACAAAGACTTGCAACGCTTGATCGATTTCCATGAGGATTCCAGCACTGTTGATGCTTACGTCCTCACCAAT GAGGATGCCGCCGCTGACATTCTTGTCACTCCTCCCACAGGGGAACCACTGGCAATCAAAGGAACCGAGCAGCCAGTAACTGGAGGGACAGAGCAGCTTG TGGTGAACGCGGAGCCATTGGAGGAGACTCAACCAGGTAGCCCACTCATTATCACTCCGGTTGCAAGTTGCATGGTTGAGGGCCCACAGATGAGTGGTGT GGTTCCTTATGAAGCGATCGGGGAGCAGAAACTTCAGAAAGTATGGGAAGGTTGCATTACTGGTCTGCACCAGCAATTCAATAATGTTGCTGAAGTACGG GAAGCCTTGCGCAAATACTCTCTTGCCCAAGGATTCTCAATCAAGTTTAAGAACAACGATGCCACACGAGTGAATGCTAGGTGCAAAGCTGAAGGGTGTA CTTGGAGGATATATGTGTCGAAGTTGACCACAACGAATTTCTTCCGGACCAAGAAATTCATTGATAAGCATACATGTGGGGCTGGAACTGGGTCAGCTCC TCGTCCTCACGCTTCTAGGAAACTGGTGGCCACAATTGTGAAAGAAAAAATGCTTAGCTCACCACACTTCAAGCCTAAGGAGATCGCTAAAGAGATACAG GAGGAATTCGGGATTGAGTTGAGGTACTACCAGACTTGGCGAGGAATGGAGGCTGCAAGGCAGGAACTTCAAGGCTCCTTCAAAGATTCGTACAATCTGC TACCTTGGTTACGCGAAAAGCTGATGGAGACGAATCCCGGCAGTTTCGTCTCTCTCAGTACCTCGGAGGACTTGACATTCCGCGGCTTCTTTGTTTGCAT GCATTCTTCAATTTACGGTTTCGAGAATGGTTGCCGTCCCTTGGTGTTCCTCGATGAGATGACGGTGAGATCGAAACATGAATCGGAGCTGCTCACCGCA ACTGCATTAGATGGGAACGACGGTATTTTCCCTCTTGCCTTCGCTGTAGTGGATGCTGTTAGTGAAGAGAGTTGGCAGTGGTTTCTGGAGCAACTGAAAG CTGCTCTAACTACATCCGAGCCGATCACGTTTGTTGCAGATCGACTGATGGGATTACGACAGTCCATTCCGTTGGTTTTCCCAAATTCGTACCATGGTTT TTGTATTCGTCGGCTGTCAGACGAGTTGCTCAAGGATTTGAGTGGGGTGATATGCACTCAAGAAGTTGCCGATGTCCTGATGGGTCATATGTACGATGCT GCCCAAGCGGCAACACGAGAGGGATTCATGAAGTCCATGGACAAAATTAAAAGTATATCTCCAGAGGCTTGGGAATGGATTCTACAGAGTGAACCAGACC ACTGGGCCAACTACCTCTTCGTCGGTTCGCGTTACAACCAAATCACATCAGGGATTGCGGAGTCATTCTACAGCTGGGTGCCCGAACTTCTAATGCCGGT CGTACAGTTTGTGGACACAATTCGGCAGAACATCATGGAGTTGATTTACACAAAAAGGGTGGAATCGGATCAGTGGCCATCCAAAGTAACTCCTTCCTTG GAAGGCAAGTTACAGAAAGAGGTAATGAAGGCACAGGCGCTTCGAATTTTCCCATCTACGAGTGCTGAGAGTACGTTTGAAGTGCACGACTATTTTGGTT CGGTTAATCACACCGTAAATGTGGACACATGGAGCTGTTCGTGTAGAGACTGGCGGCATAACGGGTATCCATGTTCTCATGCAGTCGCGGTGCTCCAAGG GATTGGGATGGATCCATATGACTACTGCGCAAAATACTACACGACAGAGACGTTCCAGGTGACATATGGAGTGCCTGTAAACCCTGTTCCGACGGGAGAT AAGCCGGTGCAGGATGCATCAACACCAATCCTGGTGCAGCCTCCAGCCCTGGTTCGAGTCTCGGGGCGTCCCAAGGAGCGAAGAATAAGGAAAAGAGGGG TAATAAAACGGACACTGCATTGCAGCAAGTGCAAAGGAGCAGGTCACAACAGATCTACTTGCACAGAGGAGGATGAACAACAGGCACAGGCGCCTATGTT GGGTGAGTAG
AA sequence Show only first row Show all	>Lus10010073 pacid=23158871 polypeptide=Lus10010073 locus=Lus10010073.g ID=Lus10010073.BGIv1.0 annot-version=v1.0 MSKLIVICQSGGKFAPADDGGLSYSGGEAHALSISRDSKFDDLKAELAEFWKYDPNAITVKYFVPNNNKTLITVSSDKDLQRLIDFHEDSSTVDAYVLTN EDAAADILVTPPTGEPLAIKGTEQPVTGGTEQLVVNAEPLEETQPGSPLIITPVASCMVEGPQMSGVVPYEAIGEQKLQKVWEGCITGLHQQFNNVAEVR EALRKYSLAQGFSIKFKNNDATRVNARCKAEGCTWRIYVSKLTTTNFFRTKKFIDKHTCGAGTGSAPRPHASRKLVATIVKEKMLSSPHFKPKEIAKEIQ EEFGIELRYYQTWRGMEAARQELQGSFKDSYNLLPWLREKLMETNPGSFVSLSTSEDLTFRGFFVCMHSSIYGFENGCRPLVFLDEMTVRSKHESELLTA TALDGNDGIFPLAFAVVDAVSEESWQWFLEQLKAALTTSEPITFVADRLMGLRQSIPLVFPNSYHGFCIRRLSDELLKDLSGVICTQEVADVLMGHMYDA AQAATREGFMKSMDKIKSISPEAWEWILQSEPDHWANYLFVGSRYNQITSGIAESFYSWVPELLMPVVQFVDTIRQNIMELIYTKRVESDQWPSKVTPSL EGKLQKEVMKAQALRIFPSTSAESTFEVHDYFGSVNHTVNVDTWSCSCRDWRHNGYPCSHAVAVLQGIGMDPYDYCAKYYTTETFQVTYGVPVNPVPTGD KPVQDASTPILVQPPALVRVSGRPKERRIRKRGVIKRTLHCSKCKGAGHNRSTCTEEDEQQAQAPMLGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	0	1
AT1G79150			binding (.1)		Lus10029032 [exp]	4.0	0.9345
AT3G14120			unknown protein		Lus10015675 [exp]	4.2	0.9294
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	5.9	0.9364
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	8.0	0.9293
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	9.4	0.9032
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10003998 [exp]	16.4	0.9170
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	16.9	0.9193
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	18.7	0.9218
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10032452 [exp]	21.2	0.9271
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10029912 [exp]	21.2	0.9185

Compare expression of checked genes

Lus10010073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.