Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62150 1511 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1511 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1503 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G01830 1491 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02530 1473 / 0 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01820 1412 / 0 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT5G46540 1364 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT4G18050 1334 / 0 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT3G28860 982 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 980 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010067 [exp] 1628 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1595 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038049 [exp] 1556 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 1553 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038050 [exp] 1529 / 0 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010068 [exp] 1512 / 0 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010012 [exp] 1417 / 0 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004520 [exp] 969 / 0 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10030674 [exp] 954 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 1602 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 1579 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 1572 / 0 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 1545 / 0 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.002G187400 [exp] 1527 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 1486 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 1412 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.017G081100 [exp] 968 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 962 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 962 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10010074 pacid=23158903 polypeptide=Lus10010074 locus=Lus10010074.g ID=Lus10010074.BGIv1.0 annot-version=v1.0 ATGACGCCCTCCTCCTTCAACTTCTCTTTCATCAACCGCCCTTCACAATCATATCTGTTGTATAAACTTATGCTTCACTCCTTACCAGATTCTACCAAAA TTTTCCACCATAATTCGGATGATATGGCCGAAGCTGAAGCAGCAAACACAGTTGCTTACAGTAAGCTGTTTTCGTTTGCGGATTCCAAGGACATTGCGCT GATGGTGTTGGGCAGTATTGGCGCTGTTGGGAATGGCTTAACTATGCCTTTAATGGCGATTGTGATGGGCAAAATGGTTGATTCTTTCGGACACGCTCAG ACCAGGGAAGCAGTAGTTCGTGTGGTCTCCAAGGTTGCTGTAGACTATATCTACTTGGGGCTAGGAGCTGCAGTGGCTTCATTTCTTGAGATGAGTTGCT GGATGGTAGCGGGAGAAAGGCAAGCAGCAAGGATAAGAAGTTTGTATCTGAAAACTATACTGAGACAGGACATTACTTTCTTCGACAATGAAACAAGCAC CGGAGAGATCATAACCAGGATGTCCAATGACACATTCTTAATTCAAGAAGCCATGGGTGAAAAGGTGGGGAAATTTCTGCAGTTGGCAGCAACATTTGTT GGAGGTTTGGCTGTAGCATTTATAAGAGGGCGGAGGCTTGCCTTGGTAATGATGTCTGCTATTCCCTTCATGGTGCTTGCCGGCGGCATAATGGCTAAGG TGATCACCAAGGTGTCGGCTAACTCGCACCGGGCGTATTCAGATGCTGGAATCTTAGTTGAACAAATTGTCAGCTCCATCAGAACAGTGGCATCATTTAC TGGGGAGAAGCGAGCCACAGCTGCTTACAATAAGTTTCTTGATAAAACATACAAATCAAGCGTGAGACAAAGTATAGCTTCTGGATTAGGGATGGCCATG GTGATGATGGTTATATTTTCTAGTTATGCTTTGGCTGTTTGGTATGGTGGGAAATTGATTTTGAACAAGGGTTATTCTGGTGGTCAAGTTCTCAACGTTC TTCTGGCCATTTTGACTTCTTCCATGTCACTAGGACAAGCAGCTCCCTGCATCAGTGCATTTGCTGCAGGCAAATCTGCAGCTTACAAGATGTTTGAAAC TATCAACCGGCGCCCCGAGATTGGCACTTACGGTTCTGGTGGAAGAATACTAGAAGATATTCGAGGGGATATCGAGATGAGGGAATTGTATTTCAGTTAT CCAGCTAGACCAGAAGAACAAACTTTAAGTGGGTTTTCTCTGGTCATCCCCAGTGGAACAAGAGCAGCACTGGTGGGGCACAGTGGGAGTGGGAAATCTA CTGTGATCAGTTTGATTGAGAGGTTCTACGATCCTCAGTCTGGAGAGGTTCTCATTGATGGGATCAACCTCAAAGACTTCCAACTGAAATGGATTAGGCA AAAGATTGCCCTTGTGAGCCAGGAGCCTGTGTTGTTTGCATCAACCATCAGAGACAATATTGCATATGGGAAAGATGGTGCTTCTGATGAAGAGATCAAC TCCGCAGTTGAACTTGCAAATGTTGCGAAATTCATCGACAGGCTGCCTCAGGGACTAGATACTATGGCTGGTGAGTATGGAACTCAGCTTTCGGGCGGAC AGAAGCAGAGAATCGCCATAGCCAGGGCTATTCTGAAAGACCCTTGCATTTTACTCTTGGACGAAGCTACCAGTGCACTCGACACAAAATCCGAGAAGAT CGTTCAAGAAGCACTAGACAGGATTATGATCAATCGAACTAGCATCGTTGTAGCTCATCGTTTGACCACAGTGAGGAATGTTGATGTCATAGCTGTCATT GACCAAGGAAAAGTCGTCGAAAAAGGTTCTCATACAGAGCTATTGAAGGATCCAGATGGACCATACTCACACCTGATACGCTTGCAGGAACCAGCTCATG ACTTGAGTAGCATGGCATCCACAATTTCAAGTTTAAGCTCACGCTCACTATCATTTCAGACACTTGATAATATTCCTGACAGTAATAAGGCGGCTGAGCA AAATCCTGCAAAAGAAAATACTCAAGAGATTCCATTGCGACGGTTAGCCTACCTGAACAAACCTGAGATCCCGGTTCTCTTGGCTGGGACTATTGCAGCA TGTGCTCAGGGTACAATACTTCCAATTTACGGGGTATTAATTTCCAAAGCAATCAAATCGTTCTTCGAACCAGCGGATAAATTGAGGAGCGATACAAAGT TCTGGAGCTTGATCTTTCTCAGCCTTGGTTTCGCGACATTAGTTGTTCATCCACTTAAAACATACTTATTTGCAGTGGCTGGATCTCGTTTAATCCGCAG GATCAGGTCCATGTGTTTTCAGAAAGTGGTTAACATGGAAATCGGTTGGTTCGACGAGCTAGAGCATTCTAGTGGCGCTATAGGTGCTCGATTATCGACC GATGCTGCAATTGTGCGTAATTTAGTAGGAGATGCGCTAGCTCAGATGGTTCAAAATGTTGCTACTGTAGTTGCAGCATTGGTCATTGCATTTACAGCAA GTTGGCAACTTGCACTGATTATGCTTGCTTTGATACCTCTAATAGGCATGAACAAGTTGATCCAAGTGAGATTCATGAAGGGATTCAGTGCTGATGCAAA GGGGGCTTATGAAGAAGCTAGCCAAATTGCGAGCAATGCGCTTGGGAGCATACGAACTGTTGCTTCCTTCTGTGGTGAAGAGAAAGTGATGAAACTATAC AACGAGAAATGTGAAGTTCCCATAAAGAATGGAGTGTGGCTAGGGTTTATAAGTGGGATAGGGTTTGGACTATCTTCATTGTTTCAGTATTTGTTCTTTG CAACCAGTTTTTATTCCGGAGCTAGATTAGTTGCCCGCGGCCTTATATCATTCACAGATGTTTTCCAGGTTTTCTTTGCTTTGAGTATGGCAGTTACAGG ACTTGCTCATTCAGGCAGCAATGATGCTGATTCCTCTAAAGCAAAAGCTGCTGCTACTTCTGTATTCTCAATCATAGATAGGAAATCTCAGATTGACTCC AGTGTTGAGTCAGGAATCACACTAGATAATCTGAAGGGAGAGATCGAATTTCGGCATGTTAGCTTCAAGTACCCATCTAGACCAGATGTTCAGGTCTTCA GAGATATCAATCTAACTATCCGTTCTGGACAGACTGTTGCTCTTGTGGGGGAAAGTGGAAGTGGGAAATCAACGGTGATTGCATTGTTGCAGAGATTTTA CAATCCGGATTCGGGTCTTATTACATTGGATGGCATGGAAATCAATAAGTTGCAGCTGAAATGGTTGAGGAGGCAGACAGGACTGGTGAGCCAAGAACCT TGCTTGTTCAACGACACGATTCGAGCAAACATAGCGTACGGGAACGAATTAGGGGACACAAGCGAGTCCGAGATGATTTCTGCATCAGAGTTGGCCAACG CGCACCGTTTCATAAGTGGCTTACAACTAGGATACGAAACGATAGTCGGGGATCGTGGGATCCTGTTATCAGGAGGACAGAAGCAAAGAGTTGCAATTGC TAGAGCCATTGTGAAATGCCCCAAGATACTACTGCTAGACGAGGCAACCAGTGCGCTGGATTCGGAATCTGAGAAAGTGGTACAAGATGCATTGTGCAGA GTCATGGTGGATAGAACTACTATAGTAGTGGCTCATCGGCTTTCGAGCATCAGGTTTGCGGACTTGATTGCGGTAGTGAAAAACGGGGTGATTGTCGAAA ATGGTAAACATGAAACTTTGGTCAACATGAACGAATCCAAGCAAAATGGGCGTTGGCTCTTGTCAGAGTACTCGATCAGCTATGATGATGGGACGACTTG CTCTGAAGATGTTATATGCATGCTCAAGAACCATAGAAAATCTGATGAACCAGCCACTACCAAAAAGAGAAAGTTTGAAGAAGTGAATACTACAACTACT ACTACTGCTGGGCTTCCTTCTTCTTCTTCTTCTAAGGTTCCTAAGCTTGATGATGGTGCCACAAGCTCTGCAACCCTCATGCAGATGCAGACACGTATCT CGTTTGATTTCTCAATACCATCTCCCCCAATCGTTTTAGATGGTTCTTCTGTGGGTGACATAATTCACAACAACGAGCTACTGCCCACAATTCCATCTCA CCACTCGGTGGATGACACATCAGGATTTGAGAGTGGACAACTTGATATCAATGATATCTACATTGATGACGAGTCAATTTGGGCACTCCTTGAGGATGAC AAGGAAGAGCCTGAAAATAGTGGACTGCCTGAGCAAGTTCAATCATCTATCATCCAACCAGCTCATCAGGTTCCTCTTGATCTCGATCTCCCTGTTACAT GTTTCCCCTCTTATTCGTCTGATGTTTTACTTGATGATGAATTCATTCAGCATATAACCAGTCCCCGTTACATTCCTTGCTCCCTTGTTTCAGATTCCGG TCTTGAAATTAATCCATTTTCTGATTTTCATGACTCTTTCCAGTTTTAG
AA sequence Show only first row Show all	>Lus10010074 pacid=23158903 polypeptide=Lus10010074 locus=Lus10010074.g ID=Lus10010074.BGIv1.0 annot-version=v1.0 MTPSSFNFSFINRPSQSYLLYKLMLHSLPDSTKIFHHNSDDMAEAEAANTVAYSKLFSFADSKDIALMVLGSIGAVGNGLTMPLMAIVMGKMVDSFGHAQ TREAVVRVVSKVAVDYIYLGLGAAVASFLEMSCWMVAGERQAARIRSLYLKTILRQDITFFDNETSTGEIITRMSNDTFLIQEAMGEKVGKFLQLAATFV GGLAVAFIRGRRLALVMMSAIPFMVLAGGIMAKVITKVSANSHRAYSDAGILVEQIVSSIRTVASFTGEKRATAAYNKFLDKTYKSSVRQSIASGLGMAM VMMVIFSSYALAVWYGGKLILNKGYSGGQVLNVLLAILTSSMSLGQAAPCISAFAAGKSAAYKMFETINRRPEIGTYGSGGRILEDIRGDIEMRELYFSY PARPEEQTLSGFSLVIPSGTRAALVGHSGSGKSTVISLIERFYDPQSGEVLIDGINLKDFQLKWIRQKIALVSQEPVLFASTIRDNIAYGKDGASDEEIN SAVELANVAKFIDRLPQGLDTMAGEYGTQLSGGQKQRIAIARAILKDPCILLLDEATSALDTKSEKIVQEALDRIMINRTSIVVAHRLTTVRNVDVIAVI DQGKVVEKGSHTELLKDPDGPYSHLIRLQEPAHDLSSMASTISSLSSRSLSFQTLDNIPDSNKAAEQNPAKENTQEIPLRRLAYLNKPEIPVLLAGTIAA CAQGTILPIYGVLISKAIKSFFEPADKLRSDTKFWSLIFLSLGFATLVVHPLKTYLFAVAGSRLIRRIRSMCFQKVVNMEIGWFDELEHSSGAIGARLST DAAIVRNLVGDALAQMVQNVATVVAALVIAFTASWQLALIMLALIPLIGMNKLIQVRFMKGFSADAKGAYEEASQIASNALGSIRTVASFCGEEKVMKLY NEKCEVPIKNGVWLGFISGIGFGLSSLFQYLFFATSFYSGARLVARGLISFTDVFQVFFALSMAVTGLAHSGSNDADSSKAKAAATSVFSIIDRKSQIDS SVESGITLDNLKGEIEFRHVSFKYPSRPDVQVFRDINLTIRSGQTVALVGESGSGKSTVIALLQRFYNPDSGLITLDGMEINKLQLKWLRRQTGLVSQEP CLFNDTIRANIAYGNELGDTSESEMISASELANAHRFISGLQLGYETIVGDRGILLSGGQKQRVAIARAIVKCPKILLLDEATSALDSESEKVVQDALCR VMVDRTTIVVAHRLSSIRFADLIAVVKNGVIVENGKHETLVNMNESKQNGRWLLSEYSISYDDGTTCSEDVICMLKNHRKSDEPATTKKRKFEEVNTTTT TTAGLPSSSSSKVPKLDDGATSSATLMQMQTRISFDFSIPSPPIVLDGSSVGDIIHNNELLPTIPSHHSVDDTSGFESGQLDINDIYIDDESIWALLEDD KEEPENSGLPEQVQSSIIQPAHQVPLDLDLPVTCFPSYSSDVLLDDEFIQHITSPRYIPCSLVSDSGLEINPFSDFHDSFQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010074 [exp]	0	1
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	57.7	0.7263
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	112.0	0.6903
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10037555 [exp]	154.3	0.6638
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	162.9	0.6586
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	186.5	0.6538
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	201.1	0.6754

Compare expression of checked genes

Lus10010074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.