Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04940 409 / 7e-143 scramblase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004532 [exp] 646 / 0 AT2G04940 426 / 2e-149 scramblase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079500 [exp] 419 / 2e-147 AT2G04940 457 / 9e-162 scramblase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF03803 [flax] [poplar] Scramblase Scramblase
Representative CDS sequence Show only first row Show all	>Lus10010075 pacid=23158922 polypeptide=Lus10010075 locus=Lus10010075.g ID=Lus10010075.BGIv1.0 annot-version=v1.0 ATGAATTGGATCAAGGGTTCCGATTTCTTTGCGAGGAACTTATTTGGTAGATATGCAATGCTGGCTGAAGCTGGAGGAGCTTGCTCTGGTTTACATGTAA AACATGGGGTTGAATCCTTTTCTAGCAGATTTCAACATAGTGCAGCTAATGATAGTCACTTGAGTAGAGACTTCCTTGCACGGCTGTGGGTTTTGGACAA GAAGGCAGAGAAATCTGCTAGGAAAGTAGCAAAGAAGTGCGCTAAATGTAGACAGTTTTCACAAAGTTCTCAACATGATGGTACAGTAGTTTTAGAGCAA CCTCCTCCCGGCCTGCCGTTGTCTGGTTATCTCAAGCCAACATCCTTGGCAGAGGCTCAGGTTGCACCTCTTCTTGCAAGATCCAATCTACTAATCACCA GGGATATTGAGTGGGCAAATCTTGTTCTAGGTTTTGAGCAGGAGAACCGGTATGCTGTCTTAGATGTTTGTCACCCCCAAGCACCTGCAGGTTTTATTCG TGAACAGAGTAATATGCTTGCTAGGCAGTTCCTTCGTACAAGACGTCCTTTTGTTGCCTTGATAACCGACGCCATGGGTAATGAGCTATTCAGGGTTCGG AGGCCTTATTGGTGGATAACTAGCTCAATTTATGCAGAGATCAATGGCAAGGAGGTTGGTGTGGTTCACAGACGGTGGCACCTATGGAGGAGGATCTATG ACTTGTACCTTGGGGACAAGCAATTCGCTGTAGTTGAAAATCCTGGACTTTGGTATTGGACGTTTACTTTGAAAGACATAGATGGAAAAGTGCTGGGTCA AATAGATCGTAATTGGAGGGGATTTGGATTTGAGATATTGACCGATGCTGGACAATACGTGATAAGGTTTGGAAGTCAGGAGACTGAACATTCAAGTCTG ATCGAAGAACTGGAAGTTGCTCGTCCTCTGAGTCTCACCGAAAGAGCAATAACGGTTGCATTGGCCATTTCACTGGACAATGACTACTTCTCACGGCATG GTGGATGGTAA
AA sequence Show only first row Show all	>Lus10010075 pacid=23158922 polypeptide=Lus10010075 locus=Lus10010075.g ID=Lus10010075.BGIv1.0 annot-version=v1.0 MNWIKGSDFFARNLFGRYAMLAEAGGACSGLHVKHGVESFSSRFQHSAANDSHLSRDFLARLWVLDKKAEKSARKVAKKCAKCRQFSQSSQHDGTVVLEQ PPPGLPLSGYLKPTSLAEAQVAPLLARSNLLITRDIEWANLVLGFEQENRYAVLDVCHPQAPAGFIREQSNMLARQFLRTRRPFVALITDAMGNELFRVR RPYWWITSSIYAEINGKEVGVVHRRWHLWRRIYDLYLGDKQFAVVENPGLWYWTFTLKDIDGKVLGQIDRNWRGFGFEILTDAGQYVIRFGSQETEHSSL IEELEVARPLSLTERAITVALAISLDNDYFSRHGGW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	0	1
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	1.4	0.8602
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	4.7	0.8147
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	11.0	0.8137
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	12.4	0.7797
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	12.6	0.7853
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	14.0	0.7822
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	15.1	0.7614
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	15.8	0.8004
AT5G57510			unknown protein		Lus10009171 [exp]	16.6	0.7476
AT1G10890			unknown protein		Lus10043141 [exp]	25.5	0.7968

Compare expression of checked genes

Lus10010075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.