Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61730 57 / 9e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 56 / 2e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00270 54 / 5e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G25650 52 / 7e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 50 / 1e-06 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 50 / 2e-06 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 48 / 8e-06 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 46 / 3e-05 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G14280 45 / 8e-05 GeBP DNA-binding storekeeper protein-related (.1) AT2G01370 44 / 0.0001 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007188 [exp] 333 / 3e-110 AT4G00250 61 / 4e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 60 / 7e-10 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 59 / 2e-09 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 47 / 1e-05 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 47 / 2e-05 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 44 / 0.0002 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119800 [exp] 64 / 1e-10 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 62 / 4e-10 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 61 / 5e-10 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 42 / 0.0008 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10010076 pacid=23158925 polypeptide=Lus10010076 locus=Lus10010076.g ID=Lus10010076.BGIv1.0 annot-version=v1.0 ATGGCTAAGAAGAATCGTCCAATCGAGCAAGAGCAGGAGGCCGATCAGCTCAAATCCACACCCAGCAAACCCTCCGCCAGAAAGGCAGCAGCACCACAAT CGGATAACGAGCCAGACTCCGACTCCAGCTGTTCTTCCCCTTCGCTTTCAGCCTTTGAGGTGAAACCAATCGCCATGCAGACAGCTCCCCGGAAGAAGGA AACCCCTAGCCCACCGAAGGAGAAGAAATCAGATGATGGAAAGGGCCGGTGGAGCTTCAAAGACGAGATTGCCCTGCTTGATGCGGTTATCCAGTACAAA TCTCAGATTGGCCCCGATCCTTGGTCCAACTGGGCCGCCTTTCTCGATTATATCGAGAAATCTGGATCGCTGCAGGTGAAAATCCCGACTAAGGACTCCC TAGCGAAGAAGGTAAGGAAGTTTAAAAAGGACTATCTCAGCATTGTGAAAAGAAATGAAGGTGAAAGTGAGAACCAGGCTCCTGTTTTCTCTGACCCGGA TGAACGGGATTTATTTCATCTGTGTGACAAGATTTGGGGTAGTGGTGAGGATCAAGATTGTAGTTTGAAGAAGGATAATCCTCCTAAGAAGGTTAATTTA GGTCCTCGTTTGGATGAGAATCCTGCTAAGAAGTCAAGGGGAAGTGAAGTGGCAAAGGAGAAGGAGAAAGAGACACGTGTGGTTGTAGAGGAGGATAAGA GGAAGGGTACCGTGAAGAAGAGTAACTCTGGTATTATTTTAGGATTGCCAATTGAGGAGCCTCCTGCCAAGAAGCGGAGGAGGAGTGAAGCGAAGAAACA GAAGGAGACTCGTGTGGTTATGAAGGATGATGAGAATGATAGTGAGAAGGAGAAGGGAAGGGAGAAGGAGGCTGTTTTAGTTATGGTGGAGGAGAATGGT GTGAACGAGGATGATGATGATGATGGCGAGAAGGAGAATGATGCGAATGAGGATGAGGATGAAGATAAGGGGAAGAATGATGTGAATGATGATGTGGAGG ACAAGGAGAATGATGCTAATGAGGATGATGATGCGGAGGAGAAGGGGAAGGAGAAGGGGAAGGGGAAGGAGACTGATGTGGTTATGGAGAAGCATGAGCT ATGGCAGAAGTACCCTCGGGTATTTGCTTCCATGGTCGTTAGATTGGCTTTCATGGACAAGGCACACGGCGGGAATGTGTCTGATTTGAGGCAAGTATGC AAGGAGATTATCGAGAAAGCTGATGAAGAAAAGTTGAAAGATTGGGAATCTAGGTGGCAGAAGCAGATGAAGGTTGAGTTGGAGGCTTTGGTTGGGAGGA AAACCCTGGAGATTGAAGAGTCAACAGAATGGTTGGATATCCTGCAGAGGTAA
AA sequence Show only first row Show all	>Lus10010076 pacid=23158925 polypeptide=Lus10010076 locus=Lus10010076.g ID=Lus10010076.BGIv1.0 annot-version=v1.0 MAKKNRPIEQEQEADQLKSTPSKPSARKAAAPQSDNEPDSDSSCSSPSLSAFEVKPIAMQTAPRKKETPSPPKEKKSDDGKGRWSFKDEIALLDAVIQYK SQIGPDPWSNWAAFLDYIEKSGSLQVKIPTKDSLAKKVRKFKKDYLSIVKRNEGESENQAPVFSDPDERDLFHLCDKIWGSGEDQDCSLKKDNPPKKVNL GPRLDENPAKKSRGSEVAKEKEKETRVVVEEDKRKGTVKKSNSGIILGLPIEEPPAKKRRRSEAKKQKETRVVMKDDENDSEKEKGREKEAVLVMVEENG VNEDDDDDGEKENDANEDEDEDKGKNDVNDDVEDKENDANEDDDAEEKGKEKGKGKETDVVMEKHELWQKYPRVFASMVVRLAFMDKAHGGNVSDLRQVC KEIIEKADEEKLKDWESRWQKQMKVELEALVGRKTLEIEESTEWLDILQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	0	1
AT4G00250	GeBP		DNA-binding storekeeper protei...		Lus10007188 [exp]	1.0	0.9243
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	1.7	0.8826
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	4.9	0.8778
AT3G49601			unknown protein		Lus10000736 [exp]	5.5	0.8667
AT2G16485			nucleic acid binding;zinc ion ...		Lus10042072 [exp]	6.9	0.8902
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	6.9	0.8250
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	12.2	0.8317
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	12.5	0.8591
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	13.9	0.8447
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	16.0	0.8549

Compare expression of checked genes

Lus10010076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.