Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17210 204 / 1e-66 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) AT1G61065 63 / 4e-12 Protein of unknown function (DUF1218) (.1) AT1G68220 54 / 1e-08 Protein of unknown function (DUF1218) (.1) AT1G13380 43 / 5e-05 Protein of unknown function (DUF1218) (.1) AT1G52910 42 / 7e-05 Protein of unknown function (DUF1218) (.1) AT1G31720 42 / 7e-05 Protein of unknown function (DUF1218) (.1) AT4G27435 41 / 0.0002 Protein of unknown function (DUF1218) (.1) AT3G15480 40 / 0.0003 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007189 [exp] 62 / 7e-13 AT5G17210 66 / 2e-15 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Lus10018474 [exp] 52 / 3e-08 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10034105 [exp] 52 / 8e-08 AT1G31860 367 / 1e-125 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10043484 [exp] 51 / 1e-07 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 47 / 1e-06 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10032662 [exp] 47 / 2e-06 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 44 / 2e-05 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 43 / 5e-05 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048300 [exp] 253 / 1e-85 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Potri.008G124100 [exp] 57 / 5e-10 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 55 / 4e-09 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 48 / 8e-07 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 47 / 1e-06 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 47 / 2e-06 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.004G235000 [exp] 47 / 2e-06 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 47 / 2e-06 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10010077 pacid=23158902 polypeptide=Lus10010077 locus=Lus10010077.g ID=Lus10010077.BGIv1.0 annot-version=v1.0 ATGGAGAGAAAGACTATATTGCTTTGCAGCGTTGTCGCCCTTCTCGGTTTGCTCTCAGCTTCCTCTGGTTTCGCTGCAGAAGCCACCCGGATCAAGGGTT CACAAGTTCAGTTCACAACCACAACGCAGTGTGCCTATCCCAGGAGCCCAGCATTAGGCTTAGGTGTAACCTCTGCTGCCTCTCTTATGCTTGCCCAAGT GGTCTTAAACGTTGCCACTGGTTGCATTTTCTGTAGACGAACCCCTCACCCATCCAATTCCAACTGGACCATTGCTTCTATCTGCTTCGTTATGTCCTGG TTCACCTTTGTGGTTGCGTTTCTTCTCCTGTTAACAGGAGCTGCACTGAACGATCAACACGGCGAAGAGAGCATGTACTTTGGCAACTACTACTGCTACG TTGTGAAGCCTGGAGTATTTGCCGGAGGCGCCCTGCTGGCCCTTGTAAGCATCACCCTCGGGATCCTCTATTACCTCGCACTCAACTCAGCAAAGAGCGG GGATAGCGTAATGTGGGGCAATAGGGGTCCTCCTCCTTCGACAACTGGTGACGCTATGAATCAAAGCGGGATAGCTATGGGGCAACCCCAATTTCCAGCA CAAGCGGGCAGCACCCTAGACCCGGTCTTCGTACATGAAGACACATACATGAGAAGGCAGTTCACTTGA
AA sequence Show only first row Show all	>Lus10010077 pacid=23158902 polypeptide=Lus10010077 locus=Lus10010077.g ID=Lus10010077.BGIv1.0 annot-version=v1.0 MERKTILLCSVVALLGLLSASSGFAAEATRIKGSQVQFTTTTQCAYPRSPALGLGVTSAASLMLAQVVLNVATGCIFCRRTPHPSNSNWTIASICFVMSW FTFVVAFLLLLTGAALNDQHGEESMYFGNYYCYVVKPGVFAGGALLALVSITLGILYYLALNSAKSGDSVMWGNRGPPPSTTGDAMNQSGIAMGQPQFPA QAGSTLDPVFVHEDTYMRRQFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	0	1
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	1.4	0.8803
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	1.4	0.8821
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	3.0	0.8734
AT2G18910			hydroxyproline-rich glycoprote...		Lus10006958 [exp]	3.2	0.8537
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	4.5	0.8708
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	4.9	0.8425
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	10.6	0.8414
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	10.7	0.8151
AT5G65250			unknown protein		Lus10000635 [exp]	11.6	0.8358
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	11.8	0.8207

Compare expression of checked genes

Lus10010077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.