Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01810 1244 / 0 Sec23/Sec24 protein transport family protein (.1) AT2G21630 115 / 4e-26 Sec23/Sec24 protein transport family protein (.1) AT4G14160 112 / 4e-25 Sec23/Sec24 protein transport family protein (.1.2.3) AT3G23660 108 / 4e-24 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 108 / 7e-24 Sec23/Sec24 protein transport family protein (.1) AT5G43670 89 / 7e-18 Sec23/Sec24 protein transport family protein (.1) AT2G27460 63 / 9e-10 sec23/sec24 transport family protein (.1) AT3G07100 50 / 1e-05 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007190 [exp] 1634 / 0 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 122 / 4e-28 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 116 / 2e-26 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 115 / 3e-26 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 111 / 8e-25 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 81 / 3e-15 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 79 / 1e-14 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 66 / 5e-11 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 61 / 3e-09 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G112600 [exp] 1363 / 0 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 1357 / 0 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 132 / 2e-31 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 129 / 2e-30 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 115 / 3e-26 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 96 / 5e-20 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 87 / 2e-17 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 71 / 2e-12 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.004G201800 [exp] 59 / 1e-08 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.008G049700 [exp] 57 / 7e-08 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10010078 pacid=23158926 polypeptide=Lus10010078 locus=Lus10010078.g ID=Lus10010078.BGIv1.0 annot-version=v1.0 ATGGCTAATCCGCATCAATCTTCCCCTCAACCTGATAGAAGTCATGTTCTTTCTTCACCTCAACCATCAACCGGACCTCCTAGATTTCCTCCCCCAAAGT TGCAACAAGATCACCTTTCCCCTTCTGTCAGAACTCCGACTTTGATGTCGCCGGCCAATGGAGTTCCAAGTGGAAGCCCAATTCCTCATATGAACACTCC GCCTGGCCCTCCAGTCTTCACTTCACCAGTCCGCCCTGCTGCAGTGCCTTTCCGGACTTCTCCAGCAACTCCTCAGCCTGTAGCCTTCTCATCAGGATCC TCATTGCCCACTTCATCACCTCTCAACTTTTCGAATGGCTCGCCTCTTTCGGATCCTCAGCTTCCCCAAGCAACAGAGGAAAATTACTCTGCTGAGCAAT CACCCTGTGTTTTATTCTCAGCCAGAAAGGTTCTGAAACAAAAAAAACTAGCAAATGCAGCTAGTTTGGGTTTCGGGGCATTGATTTCGCCTGGTAAAGA GATTTTACAAGGTCCTCAAATTGTACAACGTCTTGCCCATCGCTGCCAAAACTGTGGAGCCTATGCAAATCTATATTGCAAGATATTACTTGGTTCCGGT CAGTGGCAATGTGTAGTTTGCATGTCACTGAATGGAAGTGACAGGGAATATGTAGCACCAATTAAGGATGATCTACGAAATCTGCCGGAACTTTCGTCTC CAGTAGTGGACTATGTTCAACCTGGGAATAAGAGATCTGGTTTCATTCCCGTTTCTGATTCTAGAATGTCTGCACCTGTTGTTCTTGTTATTGATGACTG CTTGGATGAGCAACACCTGCAACATTTACAAAGTTCCTTACATGCATTTGTTGATTCTCTTCCTCCTACAGCAAGAATAGGAATCATAACATATGGCCGT GTAGTCTCTGTTTACGATTTTACAGAAGAGTCGTTTGCTTCAGCGGATGTGCTTCCAGGAGACAAATCACCTAATTCAGAATCTCTGAAAGGGTTAATCT ATGGGACCGGTGTGTACTTGTCGCCAATGCATGCTTCGAAAGAAGTAGCAAATAAAATATTCTCGTCACTTAGACCGTACAAGTTGGACATTGCAGAAGC TTCAAGAGATCGTTGCTTAGGCACTGCGGTTGAAATAGCTCTAGCTATAATTCAGGGGCCATCTGGAGAGATGTCCAGAGGTGTAGTTAAGAGGGCAGGG GGTAATAGCAGGATCATTGTATGTGCTGGTGGACCTAGTACCTATGGTCCCGGATCGGTTCCTCATTCGTTTGGCCACCCGAACTATGCTCATCTTGAAA GTACCGCCTTGAAATGGATGGAGCATCTGGGTCGTGAAGCTCACCTGCATAATACAGTGGTTGATATTTTATGTGCTGGAACTTGCCCAGTTAGAATCCC AATTTTACAGCCTCTTGCTAAATCCTCGGGGGGTGTTCTGGTTCTTCATGATGACTTTGGTGAAGCCTTCGGCGTGAACTTGCAAAGAGCGGCTTCCAGG GCATCAGGTTCGCATGGTCGTTTGGAAATTCGATGCTCTGATGATATTCTTGTTACGCAAGTTGTCGGTCCAGGGGAAGAGGCACATGTAGACAGTGAAT TTAAAAGTGATACTTCTATCTCTATTCAGATGCTAAGTGTTGAAGAATCTCAGTGCTTTGCACTGTCAATGGAGAATAAGGGTGACATTAAGGGTGATTC TGTATATTTCCAGTTCGTCATCCAATTTTCAAATGTTTATCAAGCAGATGTTTCGAGAGTCATAACCATTAGACTACCTACTGTCGATAGTGTTTCGGCA TATCTAGACAGTGTCCATGATGAAGTGGCTGCAATATTGATTGCGAAGAGGACTCTACTGAGAGCCAAAAACTCTGCTGATGCTATTGATATGAGGGCAT CGATAGACGAGCGAATTAAGGACATTGCTTTGAAATTCGGGGCTCAAGTGCCCAAGTCAAAACTCCGCAGATTTCCCAAAGAGTTGTCTTTGTTGCCGGA ACTCCTTTTTCATCTCAGAAGAGGGCCATTATTGGGAAGCATTGTTGGCCACGAAGATGAACGTTCTGTTTTAAGGAACTTGTTTCTAAGTGCCTCATTT GATCTTTCACTCCGTATGGTAGCACCGAGATGTCTAATGCACCGGGAAGGAGGGACCTTCGAGGAATTGCCAGCCTATGACCTTGCAATGCAGTCTGACA CAGCTGTTGTTCTAGATCATGGCACAGACGTATTCATTTGGCTGGGTGCTGAACTAGCCATGGATGAAGGTAGAAATGCAGCAGCTTTAGCTGCTTGCAG AACATTGGCTGAAGAGCTCACTGAATCGCGATTTCCTGCTCCTAGGATCCTTGCTTTCAAGGAAGGGAGCTCTCAGGCACGGTATTTCGTCTCAAGACTG ATACCAGCACGCAAGGATCCTCCTTATGAACAGGAGGCGAGATTCCCACAGCTTCGAACATTGACAATAGAGCAGCGAACCAAGTTGAAAAGCAGCTTTC TGCACTTTGATGATCCCAGTTTCTGCGAATGGATACGGAGTTTAAAAGTTGTGCCACCGGAACCAAGCTAA
AA sequence Show only first row Show all	>Lus10010078 pacid=23158926 polypeptide=Lus10010078 locus=Lus10010078.g ID=Lus10010078.BGIv1.0 annot-version=v1.0 MANPHQSSPQPDRSHVLSSPQPSTGPPRFPPPKLQQDHLSPSVRTPTLMSPANGVPSGSPIPHMNTPPGPPVFTSPVRPAAVPFRTSPATPQPVAFSSGS SLPTSSPLNFSNGSPLSDPQLPQATEENYSAEQSPCVLFSARKVLKQKKLANAASLGFGALISPGKEILQGPQIVQRLAHRCQNCGAYANLYCKILLGSG QWQCVVCMSLNGSDREYVAPIKDDLRNLPELSSPVVDYVQPGNKRSGFIPVSDSRMSAPVVLVIDDCLDEQHLQHLQSSLHAFVDSLPPTARIGIITYGR VVSVYDFTEESFASADVLPGDKSPNSESLKGLIYGTGVYLSPMHASKEVANKIFSSLRPYKLDIAEASRDRCLGTAVEIALAIIQGPSGEMSRGVVKRAG GNSRIIVCAGGPSTYGPGSVPHSFGHPNYAHLESTALKWMEHLGREAHLHNTVVDILCAGTCPVRIPILQPLAKSSGGVLVLHDDFGEAFGVNLQRAASR ASGSHGRLEIRCSDDILVTQVVGPGEEAHVDSEFKSDTSISIQMLSVEESQCFALSMENKGDIKGDSVYFQFVIQFSNVYQADVSRVITIRLPTVDSVSA YLDSVHDEVAAILIAKRTLLRAKNSADAIDMRASIDERIKDIALKFGAQVPKSKLRRFPKELSLLPELLFHLRRGPLLGSIVGHEDERSVLRNLFLSASF DLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDTAVVLDHGTDVFIWLGAELAMDEGRNAAALAACRTLAEELTESRFPAPRILAFKEGSSQARYFVSRL IPARKDPPYEQEARFPQLRTLTIEQRTKLKSSFLHFDDPSFCEWIRSLKVVPPEPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	0	1
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	3.7	0.8114
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	4.9	0.7489
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	9.6	0.7373
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10036135 [exp]	12.4	0.7210
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	13.4	0.7528
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	15.5	0.7344
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	15.5	0.7354
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	19.7	0.7155
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	21.9	0.6875
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	27.7	0.7051

Compare expression of checked genes

Lus10010078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.