Plant FIBer expression Database

Lus10010079 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01790 139 / 5e-42 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007191
[exp]
349 / 2e-124 AT4G01790 145 / 3e-44 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G112200
[exp]
197 / 1e-64 AT4G01790 160 / 1e-50 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0101 PELOTA PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence
>Lus10010079 pacid=23158852 polypeptide=Lus10010079 locus=Lus10010079.g ID=Lus10010079.BGIv1.0 annot-version=v1.0
ATGCGTAATAAAAAGAAAGCTAAACAACCCTCCTACTCCACACCCGCTCCCCAGGATCACTGTTGTATTCAAGGAGAACCTCTGGCTGCTCTCCTCAAAT
CAATCCGCAGGTGTTCAGAATCAGCTAAGACCGAGAATGGAGGAGATTCTCTTCCTCAGAAGTTCTTGTTCAAGCAACAATTTGCTATGGGAGTGAATGA
AGTTACAAGGGTACTAGAACGCATGTCTCCTGCTACTGCTCATTCTCCACAACTCGAGGAGAATCCTAAATCCCCTTCAGTTCAGCTTCAGGCTGTGCTG
GTGGCTTCTGATTGCAACCCTAGATGGCTAACGAGGCATCTCCCGAGCTTAGCTTCGTCGAGGAAGGTGCCTCTCTTCTTTGTCAAAGGTGATCAAAAGG
GTGCTGGCTCTTTGAGATTGGGTGAACTTGTTAATCTCAAAACAGCAATTGCAGTTGGTGTCAAAGTTAAGGGGAATGCTGTGAATCAGTGCCTGGAGCA
CCTACTGCTCAAAAGCAATGAAGTTGATCTCGGGAAAGAGCAGCTGACGATACCCTCTGAGTGA
AA sequence
>Lus10010079 pacid=23158852 polypeptide=Lus10010079 locus=Lus10010079.g ID=Lus10010079.BGIv1.0 annot-version=v1.0
MRNKKKAKQPSYSTPAPQDHCCIQGEPLAALLKSIRRCSESAKTENGGDSLPQKFLFKQQFAMGVNEVTRVLERMSPATAHSPQLEENPKSPSVQLQAVL
VASDCNPRWLTRHLPSLASSRKVPLFFVKGDQKGAGSLRLGELVNLKTAIAVGVKVKGNAVNQCLEHLLLKSNEVDLGKEQLTIPSE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G01790 Ribosomal protein L7Ae/L30e/S1... Lus10010079
[exp]
0 1
AT1G60560 SWIM zinc finger family protei... Lus10025765
[exp]
2.8 0.8088
AT5G51140 Pseudouridine synthase family ... Lus10016743
[exp]
7.9 0.7848
AT1G14770 RING/FYVE/PHD zinc finger supe... Lus10015562
[exp]
14.1 0.8067
AT3G56160 Sodium Bile acid symporter fam... Lus10043443
[exp]
14.1 0.7968
AT5G40530 S-adenosyl-L-methionine-depend... Lus10022276
[exp]
15.2 0.7955
AT5G53080 Tetratricopeptide repeat (TPR)... Lus10022387
[exp]
16.8 0.7880
AT1G07840 Sas10/Utp3/C1D family (.1.2.3) Lus10029397
[exp]
20.8 0.7785
AT2G45520 unknown protein Lus10009304
[exp]
22.2 0.7632
AT1G55170 unknown protein Lus10034321
[exp]
27.2 0.7629
AT5G45600 TAF14b, GAS41 TBP-ASSOCIATED FACTOR 14B, GLI... Lus10007555
[exp]
32.9 0.7778

Lus10010079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.