Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 77 / 7e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 73 / 3e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 74 / 8e-15 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 71 / 3e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 70 / 3e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 57 / 4e-09 B3 VDD VERDANDI (.1) AT5G18090 51 / 5e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24645 51 / 6e-07 Transcriptional factor B3 family protein (.1) AT4G31640 50 / 8e-07 B3 REM5 transcriptional factor B3 family protein (.1) AT2G24700 48 / 8e-06 B3 REM10 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036045 [exp] 107 / 1e-26 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 106 / 2e-26 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10014359 [exp] 100 / 4e-24 AT3G18990 79 / 1e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10026067 [exp] 98 / 1e-23 AT3G18990 76 / 6e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10007192 [exp] 92 / 8e-23 AT1G49475 47 / 4e-07 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 97 / 4e-22 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 94 / 1e-21 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 93 / 2e-21 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 89 / 3e-20 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 82 / 2e-17 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 81 / 1e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 77 / 1e-15 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.007G035700 [exp] 69 / 1e-13 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 69 / 3e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 69 / 1e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 66 / 1e-11 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 65 / 1e-11 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 64 / 2e-11 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 53 / 1e-07 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10010080 pacid=23158867 polypeptide=Lus10010080 locus=Lus10010080.g ID=Lus10010080.BGIv1.0 annot-version=v1.0 ATGACGGGGTTCGAAACGGAGAAGCCTCGTTTCTTCAAAATCATTCTGGAAACCACCATCTTCAACAAGCGACTAATGCTTCCCACTACGTTTGTCCGTA ATCATTATCTGAAATCTGTCTCCTCAAAGTCAAGCCCAACAACTGCTACTCTCACCATTCCAAATGGTTTGACATGGAAAGTTGATGTTGTTGTCAACGC TAGTACTACCACTACTAATGATGATCATGGTGGTGGGCCAGAAGAAGTTTGGCTGCAGGGTCAGGGCTGGGAGGAATTTGTGACGTCTCACTCTCTAGAG CATGGACATTTCATAGTGTTCCAGTACGAGGGAAACTCCAACTTCTCTGTTTTAGTTTTTGACATAAGTGCCTCTGAAATTGACTATCTTGTACCTCTGA AACGGAAGGAAGAGGCAGAGTTTAAAGACAGAGATGACGATGATGATCTTTCTATGGAGATTAAACTCAATCCAGATTTTGGTTCCCTCTCGAAACCTGG CAAACGGGGTAGGAGGAACCTGGAAATTTCCAACTCATTCACGGCCGTCATCAAGAAAAAACACGACAAGCGCCACCTTCTGGCAAGTCTTTTTTCACCC AGGCCACCACGAGAAAGCTACATGAGTTTGGTGATGAAGGGAATGATTTCTTCCATTTTTCTTCTCTTTTTTCCTTTGTGGCATGTGCAGAATATACCAA GGGCGTTTGCAAGGGGGTTGATGCTCAAGGACCAGAATCTGAAGCTTGAGGTTGTTGCTGCTGATGATAATTACATTTACAGCAACAAGGAGCAGCAATG TTGGGTAGTGGAGGCTAAGAAGGTGAGAACAAGGAATGAAATGTTTATATCTGGTGGTTGGTCCAAGTTTGTTGGGGACAACTCTCTTAAAGATGGAGAT ACTTGCAAGTTTAAGATGATTAGGGTCGGTACTACTCCCCAGGTGCTCCAAGTTTTCATCACAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10010080 pacid=23158867 polypeptide=Lus10010080 locus=Lus10010080.g ID=Lus10010080.BGIv1.0 annot-version=v1.0 MTGFETEKPRFFKIILETTIFNKRLMLPTTFVRNHYLKSVSSKSSPTTATLTIPNGLTWKVDVVVNASTTTTNDDHGGGPEEVWLQGQGWEEFVTSHSLE HGHFIVFQYEGNSNFSVLVFDISASEIDYLVPLKRKEEAEFKDRDDDDDLSMEIKLNPDFGSLSKPGKRGRRNLEISNSFTAVIKKKHDKRHLLASLFSP RPPRESYMSLVMKGMISSIFLLFFPLWHVQNIPRAFARGLMLKDQNLKLEVVAADDNYIYSNKEQQCWVVEAKKVRTRNEMFISGGWSKFVGDNSLKDGD TCKFKMIRVGTTPQVLQVFITKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	0	1
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	2.0	0.9179
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	2.4	0.9249
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030609 [exp]	2.4	0.8826
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	2.8	0.8732
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	3.5	0.8945
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	6.3	0.8915
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	7.3	0.8233
					Lus10002866 [exp]	14.4	0.8476
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	16.2	0.8608
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	22.1	0.8858

Compare expression of checked genes

Lus10010080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.