Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01690 778 / 0 PPOX, HEMG1, PPO1 Flavin containing amine oxidoreductase family (.1.2) AT5G14220 177 / 5e-49 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G57770 47 / 3e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G02350 0 / 1 protoporphyrinogen oxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007194 [exp] 989 / 0 AT4G01690 809 / 0.0 Flavin containing amine oxidoreductase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111600 [exp] 819 / 0 AT4G01690 845 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.002G186300 [exp] 811 / 0 AT4G01690 822 / 0.0 Flavin containing amine oxidoreductase family (.1.2) Potri.001G333500 [exp] 164 / 3e-44 AT5G14220 701 / 0.0 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) Potri.015G074600 [exp] 46 / 4e-05 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 44 / 0.0002 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10010082 pacid=23158917 polypeptide=Lus10010082 locus=Lus10010082.g ID=Lus10010082.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTCACCGAATTCTCTATTTTCCGGCCGACTCACTCCCTGGTTCGGTCGTCCTCCTATCACCGTGCCAATTTTATTGCTCATCGTTCGCTTA AGCTCCGATGCTCAATCACTGGGCAGCCCGCCACGTTCCCTCCTTTGAATCTCGACGGCGAATCACAATCTAAGGCCTCGCGCTCTACCACCGCCGATTG CGTTATCGTCGGAGGTGGAATCAGCGGACTCTGCATCGCTCAGGCGTTGGCCACCAAACACAACGAGGTTGCTCAGAATGTGATCGTCGCCGAGGCCAGT GACCGCGTTGGCGGCAACATCATCACCGTTGAAAGAGACGGTTATCTATGGGAAGAGGGGCCAAACAGCTTCCAGCCTTCAGATTCCATGCTCAGCTTGG TGGTGGACAGTGGTTTGAAAGATGATTTAGTGTTGGGCGATCCCGAAGCCCCGCGTTTCGTGCTGTGGGAAGGGAAATTGAGGCCTGTGCCGTCCAAGCC TACTGACTTGCCAGTCTTTGACCTGATGAGCATTGGTGGGAAACTCAGAGCTGGCTTTGGTGCTCTTGGATTGCGGCCTTCGCCACCAGGTCGTGAAGAA TCGATTGAAGAATTTGTAAGGCGTAACCTTGGAGATGAGGTTTTTGAACGTTTGATTGAGCCATTTTGCTCAGGTGTTTATGCTGGCGACCCCTCCAAAT TAAGCATGAAAGCAGCCTTTGGAAAAGTGTGGAACCTTGAGCAAACTGGTGGTAGTATCATTGGCGGGGCTTTCAAAGCGATACAGGAGAGAAGGAGAAA TCCCAAGCCTCCTCGAGACCCGCGACTTCCAAAACCAAAGGGCCAAACTGTAGGATCTTTTAGAAAGGGACTTACCATGTTACCAGTGGCACTTGCAAAA GGATTGGGTGACAAGGTCAAATTATCTTGGAAGCTTTCAAGTATCAACAAGTTGGAAAGTGGAGGATATAGCTTGACCTTTGAAACGCCAGATGGATTGG TAGCTGTACAGTGCAAAAGCGTAGTACTAACTGTCCCATCCCATATCGCAAGCAATCTCTTGCAGCCACTTTCGACTGTTGCTGCTAAAGAACTGTCAAC ATTTTACTACCCACCTGTCGCTGCAGTAGCCATTTCATACCCAAAAGAAGCAATACGACCAGAGTGCTTAATTGATGGGGAACTCAAAGGTTTTGGCCAG CTGCATCCACGAAGCCAAGGAGTGGAAACGCTTGGAACGATTTACAGCTCAGCCCTATTTCCTAATCGTACACCAGCTGGAAGAGTCTTGCTATCGAACT ACATAGGAGGTGCTACTAACCCCGGAATTTTATCCAAGACAGAGGGCCAACTTGTAGAAGCAGTGGACCGTGATTTGAGAAAGATGCTGATAAAGGCTGA TGCGAAGGATCCATTGAAACTGGGAGTTAAGGTGTGGCCAAAAGCGATCCCGCAGTTCCTAGTAGGTCATCTTGATACCCTGGAGTCAGCGAAATGTGCT CTGAGGGACAGTGGGCTGCAAGGATTGTATCTGGGAGGAAACTACGCATCTGGTGTTGCTTTGGGGCGATGTGTAGAAGCAGCTTATGAGGCAGCAGCAG AAGTTACAGATTACCTCACCCAATACGCGTACAAATGA
AA sequence Show only first row Show all	>Lus10010082 pacid=23158917 polypeptide=Lus10010082 locus=Lus10010082.g ID=Lus10010082.BGIv1.0 annot-version=v1.0 MASLTEFSIFRPTHSLVRSSSYHRANFIAHRSLKLRCSITGQPATFPPLNLDGESQSKASRSTTADCVIVGGGISGLCIAQALATKHNEVAQNVIVAEAS DRVGGNIITVERDGYLWEEGPNSFQPSDSMLSLVVDSGLKDDLVLGDPEAPRFVLWEGKLRPVPSKPTDLPVFDLMSIGGKLRAGFGALGLRPSPPGREE SIEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWNLEQTGGSIIGGAFKAIQERRRNPKPPRDPRLPKPKGQTVGSFRKGLTMLPVALAK GLGDKVKLSWKLSSINKLESGGYSLTFETPDGLVAVQCKSVVLTVPSHIASNLLQPLSTVAAKELSTFYYPPVAAVAISYPKEAIRPECLIDGELKGFGQ LHPRSQGVETLGTIYSSALFPNRTPAGRVLLSNYIGGATNPGILSKTEGQLVEAVDRDLRKMLIKADAKDPLKLGVKVWPKAIPQFLVGHLDTLESAKCA LRDSGLQGLYLGGNYASGVALGRCVEAAYEAAAEVTDYLTQYAYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10010082 [exp]	0	1
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	2.4	0.9035
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	3.5	0.9025
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	5.2	0.9098
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	5.6	0.8578
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	7.4	0.8947
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	13.0	0.8623
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	14.8	0.8963
AT1G66330			senescence-associated family p...		Lus10002290 [exp]	14.8	0.8418
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	17.9	0.8646
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	19.0	0.8765

Compare expression of checked genes

Lus10010082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.