Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46940 125 / 9e-35 unknown protein AT3G62070 109 / 1e-28 unknown protein AT4G01670 108 / 5e-28 unknown protein AT2G43340 58 / 4e-10 Protein of unknown function (DUF1685) (.1) AT1G05870 56 / 3e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 55 / 7e-09 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT1G08790 42 / 0.0001 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007198 [exp] 392 / 9e-139 AT2G46940 157 / 1e-46 unknown protein Lus10038023 [exp] 162 / 2e-48 AT2G46940 162 / 4e-49 unknown protein Lus10009965 [exp] 87 / 5e-20 AT2G46940 89 / 4e-21 unknown protein Lus10027022 [exp] 54 / 2e-08 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 54 / 3e-08 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10042536 [exp] 40 / 0.0003 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10021997 [exp] 39 / 0.0008 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111000 [exp] 196 / 2e-61 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 158 / 1e-46 AT2G46940 111 / 4e-29 unknown protein Potri.007G126700 [exp] 59 / 2e-10 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 50 / 3e-07 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.005G055100 [exp] 41 / 0.0003 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 40 / 0.0006 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010083 pacid=23158904 polypeptide=Lus10010083 locus=Lus10010083.g ID=Lus10010083.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCTGAAAGCGTAGCCATGATCTCCGGCCACGACGACGACGACGACCCTGACAGTACTACTGACGACGCCTTCGATTTCCACTCCCACCCTA ACTCACACAACCTCTCCAGGCTCTCCGTCTGCACCAGCTCCCTCTCCAGATTGTCCATTGAGAGCTTCGACGACGCCGACGACGATATCTCCGACGAGAA TCACAAGCCCAGACTCCCGAATCCGAACCTCGGATCCACGCTCGACTTCATCTGCTCCTCCGATGATGACGACTCCGATAAAGAGGCAGGAGGAGGATGT TACTCGCTGCCGGCGACGCCTCCTAGGCGGAGGAATCGCGTTGGCGGGATGTTGTCAGGGTTGGTGCAGACCAGCAAGGAGTACGCTAGCGAGAATGATG GAGTAGGGAGTAAGGCGTTTACTACGAGGCAGAAATCGAGGAGGAATCCGAGGAGTCGGAGTTTAATCAGGGATGGAAGTAATTTCTATAACGGCAGCAA CGGATTGAGCGGAGAAAGCGATTACGGCGGAGGAGGGATGGTTGTGATAACGAGGCCAAAAGGAGGTAGGAGGTCGCTGTGTATGGATTCAGAGGAAGTG AAGGCTTGTAAGGATCTAGGGTTTGAGCTGGAGCACGAACGGATGGGGGGGCTTCCGGGTCGGATCTCCGGTACTAGCAGCGCCAGCGGCGGCGATTCCC CCATCGCCAATTTGCGGATTTCCAGTCCAGGGGATAATCCTCGGGATGTAAAGTCACGGCTCAAAGTGTGGGCACATGCGGTGGCTATGGCGTCTGCCCC GACTAAACACGGCGGCGGCAGCAGCAGCAGCGCAAGTTAA
AA sequence Show only first row Show all	>Lus10010083 pacid=23158904 polypeptide=Lus10010083 locus=Lus10010083.g ID=Lus10010083.BGIv1.0 annot-version=v1.0 MASAESVAMISGHDDDDDPDSTTDDAFDFHSHPNSHNLSRLSVCTSSLSRLSIESFDDADDDISDENHKPRLPNPNLGSTLDFICSSDDDDSDKEAGGGC YSLPATPPRRRNRVGGMLSGLVQTSKEYASENDGVGSKAFTTRQKSRRNPRSRSLIRDGSNFYNGSNGLSGESDYGGGGMVVITRPKGGRRSLCMDSEEV KACKDLGFELEHERMGGLPGRISGTSSASGGDSPIANLRISSPGDNPRDVKSRLKVWAHAVAMASAPTKHGGGSSSSAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46940			unknown protein		Lus10010083 [exp]	0	1
AT2G46940			unknown protein		Lus10007198 [exp]	1.0	0.8809
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	8.5	0.8501
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	8.9	0.8637
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	10.2	0.8379
AT5G67350			unknown protein		Lus10010401 [exp]	15.4	0.8442
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	15.5	0.8412
AT4G03010			RNI-like superfamily protein (...		Lus10042681 [exp]	17.2	0.8347
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	23.2	0.8108
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	26.5	0.8329
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	28.7	0.8137

Compare expression of checked genes

Lus10010083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.