Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62060 487 / 2e-172 Pectinacetylesterase family protein (.1) AT2G46930 479 / 5e-169 Pectinacetylesterase family protein (.1) AT3G05910 468 / 4e-165 Pectinacetylesterase family protein (.1.2) AT5G26670 463 / 6e-163 Pectinacetylesterase family protein (.1.2) AT1G57590 439 / 4e-153 Pectinacetylesterase family protein (.1) AT4G19420 342 / 2e-115 Pectinacetylesterase family protein (.1.2) AT1G09550 330 / 5e-111 Pectinacetylesterase family protein (.1) AT3G09410 325 / 9e-109 Pectinacetylesterase family protein (.1.3) AT5G23870 323 / 8e-108 Pectinacetylesterase family protein (.1.2.3) AT3G09405 300 / 4e-99 Pectinacetylesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007200 [exp] 682 / 0 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 542 / 0 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 540 / 0 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10039238 [exp] 330 / 5e-111 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10034767 [exp] 327 / 2e-109 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 327 / 2e-109 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 317 / 2e-105 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 311 / 1e-103 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 310 / 2e-102 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110900 [exp] 493 / 5e-174 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.013G000900 [exp] 473 / 6e-167 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 469 / 5e-165 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.010G004400 [exp] 440 / 1e-153 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.015G145400 [exp] 338 / 5e-114 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.006G084900 [exp] 338 / 7e-114 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.004G234100 [exp] 330 / 2e-110 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.012G142300 [exp] 326 / 3e-109 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.004G233900 [exp] 315 / 4e-105 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 301 / 3e-99 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10010084 pacid=23158896 polypeptide=Lus10010084 locus=Lus10010084.g ID=Lus10010084.BGIv1.0 annot-version=v1.0 ATGGAGTCAAAGCAGCAGCAGCTCCTACTGCTGCTTTGCCTCTTCTTCAGTTCTTTAACCATTTCCATTGTTTCTGCTGATGTCACCCCCGGATCTGATT CACTCACTTGCGACATCTCCTCCTTAGCCACCACCTCCGCCGTCACCACTGCCGCCGACGCTTTACTAAGCTCAGCTCAGCCCCGACCTGTAATGGTTCC CCTCTCTCTCATCCCTGGAGCTGATTCCAAAGGAGCTGTCTGTTTGGATGGTTCACTTCCTGGTTACCATTTCCACCGTGGCTCTGGAATCGGTGCCAAC CGTTGGCTCATTCAGTTGGAGGGTGGCGGATGGTGCAACTCGCTTAGGACTTGTCTTTATAGGAGAGGTTCGCGACATGGTTCATCGAGATTCATGGAGA AGTTTATACCTTTCACTGGTATACTGAGCGATAAAGCAGAATACAATCCTGATTTCTATAACTGGAATAGGATCAAGCTTCGTTATTGCGATGGGGCTTC TTTCACCGGTGATAGCCAGAATGAGGCTGCGAAACTTTACTACAGAGGGCAACGTATCTGGTCTGCAGCCATGGAACACTTCATGACCCTTGGAATGAAG TCTGCAAACCAGGATGTTTCTGGTGGGCGCACCATGAGGAACTTCTACAGTGGAGTGATTAACATTCTGCAACCGCAGAAGGACCTGCCATCTACTTGCA CCAACCACCTGGATTCGACTTCGTGCTTCTTTCCTCAGAATTTGATCGCCAACATAAAGACACCGATGTGCCTGCTGAATGCAGCCTATGATGCATGGCA GATTCAAGCTAGTTTAGCTCCACGAACGGCTGATCCGCAAGGCCATTGGACTGCCTGCAAAAATAACCATGCAGCTTGTAACTCAGCACAGATCAACTTC TTTCAAGACTTCAGGATCCAAATGCTGAAAGCAGTGAAGAGGTTCGCCATGTCGAAACCGAACGGGCTGTTCATAAACTCTTGTTTTGCGCACTGCCAGT CTGAAAGACAAGACACTTGGTTTGCTGATGATTCTCCAGTCTTACATTCAAAGACGATAGCGCAATCAGTAGGGGACTGGTACTTCGATCGAGCGGCAGT GAAAGCTATTGACTGCCCGTATCCATGTGACAACAGCTGCCATAATCTAAGGTTCAACTGA
AA sequence Show only first row Show all	>Lus10010084 pacid=23158896 polypeptide=Lus10010084 locus=Lus10010084.g ID=Lus10010084.BGIv1.0 annot-version=v1.0 MESKQQQLLLLLCLFFSSLTISIVSADVTPGSDSLTCDISSLATTSAVTTAADALLSSAQPRPVMVPLSLIPGADSKGAVCLDGSLPGYHFHRGSGIGAN RWLIQLEGGGWCNSLRTCLYRRGSRHGSSRFMEKFIPFTGILSDKAEYNPDFYNWNRIKLRYCDGASFTGDSQNEAAKLYYRGQRIWSAAMEHFMTLGMK SANQDVSGGRTMRNFYSGVINILQPQKDLPSTCTNHLDSTSCFFPQNLIANIKTPMCLLNAAYDAWQIQASLAPRTADPQGHWTACKNNHAACNSAQINF FQDFRIQMLKAVKRFAMSKPNGLFINSCFAHCQSERQDTWFADDSPVLHSKTIAQSVGDWYFDRAAVKAIDCPYPCDNSCHNLRFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	0	1
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	1.4	0.8713
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	2.0	0.8293
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	2.0	0.8583
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	3.5	0.8314
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	7.7	0.8035
AT4G05160			AMP-dependent synthetase and l...		Lus10027377 [exp]	8.4	0.7903
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	9.2	0.7959
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	9.8	0.8166
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	10.6	0.7715
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	13.2	0.8194

Compare expression of checked genes

Lus10010084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.