Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01660 760 / 0 ATABC1, ATATH10, ABC1At ABC transporter 1 (.1) AT1G65950 110 / 3e-25 Protein kinase superfamily protein (.1) AT5G64940 101 / 5e-22 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G24810 97 / 1e-20 ABC1 family protein (.1.2) AT5G50330 96 / 1e-20 Protein kinase superfamily protein (.1.2) AT3G07700 96 / 1e-20 Protein kinase superfamily protein (.1.2.3) AT4G24810 91 / 3e-19 Protein kinase superfamily protein (.1.2.3) AT1G71810 92 / 4e-19 Protein kinase superfamily protein (.1) AT1G79600 83 / 3e-16 Protein kinase superfamily protein (.1) AT2G39190 78 / 8e-15 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007201 [exp] 1210 / 0 AT4G01660 778 / 0.0 ABC transporter 1 (.1) Lus10038017 [exp] 956 / 0 AT4G01660 772 / 0.0 ABC transporter 1 (.1) Lus10005833 [exp] 122 / 1e-31 AT4G01660 129 / 6e-35 ABC transporter 1 (.1) Lus10009257 [exp] 116 / 4e-31 AT4G01660 78 / 2e-18 ABC transporter 1 (.1) Lus10007202 [exp] 105 / 1e-27 AT4G01660 62 / 6e-13 ABC transporter 1 (.1) Lus10036636 [exp] 99 / 4e-21 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10026971 [exp] 98 / 7e-21 AT5G24810 1038 / 0.0 ABC1 family protein (.1.2) Lus10006363 [exp] 97 / 9e-21 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 96 / 4e-20 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185400 [exp] 855 / 0 AT4G01660 691 / 0.0 ABC transporter 1 (.1) Potri.004G075100 [exp] 108 / 2e-24 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 100 / 1e-21 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 99 / 3e-21 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 98 / 6e-21 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G061000 [exp] 94 / 7e-20 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.012G093600 [exp] 89 / 1e-18 AT4G24810 723 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G091000 [exp] 89 / 1e-18 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 86 / 3e-17 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G003600 [exp] 86 / 3e-17 AT5G24810 956 / 0.0 ABC1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10010085 pacid=23158880 polypeptide=Lus10010085 locus=Lus10010085.g ID=Lus10010085.BGIv1.0 annot-version=v1.0 ATGACTTCGTTTAAGAACCTAAGCAGACTCCTCGATGGCGTCTCCCTGGTCGCCAAGGAGATCGCGCTGCGCTCCCCTGCTCTTGAAGCTGCATCTAAGG GAGACGTACAAACCCTAATCTCATCCACCGCCAGAAAGGCATTGCTCGCCGCCACCGACTTGTCTGGCCTCACCAGAGGGAAAGTCCGCCAGTTCTCTGC CCCGCGACCTAAGGAGTCCGTCGTCTACTTTGACCGAACCAATGAAGCGGAGCAACCCATCCCAGTCCAGGCGCAACCTCTGAGCGATGGCCCTGACGAC AATGTCGCTCGCGAAGATCCGGTGCTTGTTGCGGTGAAGGTTAGCCAAGATATTGAAATTCCCAAGGATGAAATTTCCTCGGAGCTGAAACGCGAATTGC CCAGGGAGGTTGAGGATCAGAATCATCAGGATGAGAGTAGCATTGTTGTCGGTAAAGAGGTGACGCCACCGGCGCCGGTTATCGCGAATGCGACGGTAAC AACGCAGACGAGGAGGAAATTGAGGGAGAGAAGAGTTCCTTCCACTCCTTTTTCAAGGGCGATGGGGTTTGCTGGTCTAGGAGCTGGTCTTGTATGGGGG ACAGTCGAAGAAGCAACGAAAAGGCTTGTCTATGGCACCCCGGCTTCACAAGGAAAGCAGTCTGCTATTTCCCCATTTCTGTCTGATAAAAATGCAGAGC GTTTGGCACTGGCACTTTGTAGGATGCGTGGGGCTGCTCTCAAAGTTGGACAGATGTTAAGTATACAGGACGAGTCTCTTGTTCCCGCTCCGATCTTGGC TGCTTTAGATATCGTTCGCCAGGGAGCAGACGTGATGCCAAGGAAGCAGCTGAATCAAGTTTTGAATGCTGAGTTGGGGCCTGATTGGTCTACTAAGTTA ACCAGTTTTGACTATGAACCACTTGCTGCTGCAAGTATTGGGCAGGTGCACCAAGCAGTTACAAAAGATGGATTCAAAGTTGCAATGAAAATCCAGTATC CTGGTGTTGCAAACAGTATCGAAAGTGACATTGATAATGTTAAACTTCTTTTAGACTATACAAACTTAATTCCTGAAGGGCTCTATCTTGATAAAGCGAT GAAGGTGGCAAGAGAGGAATTAGCTCGTGAGTGTGACTACAAGTTGGAGGCAGATAACCAGAAACGTTTCCGTGATCTGATCTCCGGCAGGAAAGGGTTC TATGTTCCTTCTGTTGTAGATGAACTCTCAAGTACAAGAGTCCTAACCACTGAGCTGGTTTATGGAGTTTCCATTGACAAGGTTACATCGCTAGACCAAG AAACCCGGACTTACGTGGGGAGAAAGCTGCTGGAGCTGACATTGTTGGAGTTGTTTGACTTCCGCTTTATGCAGACGGATCCTAACTGGGGAAACTTCTT GTATGAAGATACCACAAAGACAATCAATCTCATAGACTTCGGTGCAGCTAGGGAGTATCCAAAACGCTTTGTCGACGACTATCTGAGAATGGTTCTAGCA TGTGCAAACCGTGACAAAGATGCGGTAATAGAGATGTCAAGAAGGCTTGGGTTCCTTGTAGGACAGGAATCAGATGAAATGCTGGAAGCTCATGTTGAAG CTGCATTCGTCGTAGGAATGCCATTTGCTAAACCTGGTGGGTATGATTTCCGTGCGAACAATGTGACTCATAATCTGACGGCACTAGGGGCCAAAATGCT GAAGCACAGGCTGACGCCACCACCAGATGAGGTGTACAGCCTTCACAGGAAGCTCTCCGGTGCGTTCTTAGCCTGTATCAAGCTCGGTGCAGTTGTACCG TGCCGGGAAATGTTGGTGGATATGTATGATCATCATCGGTTTGGTGAAGATGCCGATGGTGACATGTTGTCGAGTAGCTCAGTTTAG
AA sequence Show only first row Show all	>Lus10010085 pacid=23158880 polypeptide=Lus10010085 locus=Lus10010085.g ID=Lus10010085.BGIv1.0 annot-version=v1.0 MTSFKNLSRLLDGVSLVAKEIALRSPALEAASKGDVQTLISSTARKALLAATDLSGLTRGKVRQFSAPRPKESVVYFDRTNEAEQPIPVQAQPLSDGPDD NVAREDPVLVAVKVSQDIEIPKDEISSELKRELPREVEDQNHQDESSIVVGKEVTPPAPVIANATVTTQTRRKLRERRVPSTPFSRAMGFAGLGAGLVWG TVEEATKRLVYGTPASQGKQSAISPFLSDKNAERLALALCRMRGAALKVGQMLSIQDESLVPAPILAALDIVRQGADVMPRKQLNQVLNAELGPDWSTKL TSFDYEPLAAASIGQVHQAVTKDGFKVAMKIQYPGVANSIESDIDNVKLLLDYTNLIPEGLYLDKAMKVAREELARECDYKLEADNQKRFRDLISGRKGF YVPSVVDELSSTRVLTTELVYGVSIDKVTSLDQETRTYVGRKLLELTLLELFDFRFMQTDPNWGNFLYEDTTKTINLIDFGAAREYPKRFVDDYLRMVLA CANRDKDAVIEMSRRLGFLVGQESDEMLEAHVEAAFVVGMPFAKPGGYDFRANNVTHNLTALGAKMLKHRLTPPPDEVYSLHRKLSGAFLACIKLGAVVP CREMLVDMYDHHRFGEDADGDMLSSSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10010085 [exp]	0	1
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	4.7	0.8325
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10035332 [exp]	5.7	0.8348
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	10.6	0.8218
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	13.4	0.8299
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	15.0	0.8116
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	15.8	0.8172
AT5G62960			unknown protein		Lus10014556 [exp]	19.1	0.7717
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	19.2	0.8081
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10027368 [exp]	20.9	0.7869
AT3G46520		ACT12	actin-12 (.1)		Lus10029286 [exp]	21.0	0.8059

Compare expression of checked genes

Lus10010085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.