Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 908 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 444 / 6e-144 RPK1 receptor-like protein kinase 1 (.1) AT5G63930 400 / 5e-121 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 398 / 1e-120 AtPEPR2 PEP1 receptor 2 (.1) AT1G73080 397 / 8e-120 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G20140 398 / 2e-119 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G34110 386 / 3e-116 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 369 / 1e-110 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G08850 354 / 9e-105 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G74360 351 / 3e-103 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007206 [exp] 2098 / 0 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 511 / 5e-168 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10037083 [exp] 494 / 1e-161 AT3G02130 569 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10036899 [exp] 491 / 2e-160 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 487 / 5e-159 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 483 / 3e-157 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10035126 [exp] 421 / 6e-131 AT3G02130 450 / 4e-142 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10039641 [exp] 393 / 8e-119 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 386 / 1e-116 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094400 [exp] 941 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 936 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G096400 [exp] 890 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 762 / 0 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.008G009300 [exp] 422 / 2e-129 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 398 / 4e-121 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.012G088100 [exp] 395 / 3e-119 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G139700 [exp] 385 / 1e-115 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 379 / 1e-113 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G080800 [exp] 377 / 7e-113 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010087 pacid=23158857 polypeptide=Lus10010087 locus=Lus10010087.g ID=Lus10010087.BGIv1.0 annot-version=v1.0 ATGCCTCCGGATCATTTCCGCCACATCCGGTCAGGGAACTCCTGGTATCCACTCTCCTTCTCCTCCGCCGCCGCTCTGGTTGTTCTCTTGTGCTCTTCCT TTGCCTTGGCCGACGACAAACATGCATTGCTAGACTTCAAATCTGCTCTTACTCGAGACCCCTTAGGGCTTACCTCCACTTGGGACCCTAACGATCCCGA TGGTTGCTCCTGGCACGGCGTCACCTGCGACTCGGTCTCTCGTCGAGTTACTGCTCTTCGGCTCTCTCCTCCAACTGACTCCGTAGCCTGCTCTTTGTTC TCCGTCTCTGCGGCGAATGGTAACTTCTCTTTGCTCTTTCCTTGTTTAGGATTTAACCTTGATGCTCTCCCCAAATTGGAAGGCAAATTGTCGCCTAAGA TTGCCCAGCTCTCTCAGCTTAGGATTCTGTCTCTTTCGTTTAACGGTTTGTCCGGAGAGTTGCCAGTGGAGATTGGACTAATTCAGTCTTTGGAAGTGCT TGACTTGGGGTTTAATGCATTTCACGGCTCTATACCCTTCTCCCTCAAGAATTTTGCCTCCTTGCGTGTTATTAATCTGTCCGGGAATCAGTTGAATGGT ACAATTCCGGCATTCTTTAGGCAATTGAGGGACGCGCGAGTCGTTGCGTTGTCGTTTAATTTGTTGAGTGGTTCCATCCCCACTGATTTAGGAGACAATT GTGGTAGCATGGAGCATCTGTTTCTGAATGGCAACTCTCTTTCTGGCTCGATTCCTCCGAATCTTGGAGGTTGCAAAGAGCTACGCTCGTTAGTACTGTC TTCAAACTTGTTGCAAGATGATGTTCCTTCAACTCTTGGTACGTTAGCAAATCTGGAAGTGCTTGATCTATCCAGGAACTTCCTAAGTGGGAACATCCCT CCAGAGTTGGGGAACTGTGTGCAGTTAAAGTTGCTTGTACTGAAAAATACTTATGGCCTTCTCTGGTCAAGGAGTCCTGCAAGTTCAAATAGTGATGAAG ACGAACGCGGAGAAGGGGAGTTCAACTACTTCGACGGAAACTTGCCTGATAGCATCTTAAAGCTCCCTAATCTCCATGTGCTTTGGGCACCAAACTTGAA TCTGGAAGGGAGTTTTCCACAAATTATGGGTCCTTCTTGCAACTTGAAGATGCTCAATTTGGCAGGGAATTATTTTGTGGGAGAAATACCAGTGTCCCTT GGTAATTGCAACAGCTTGACGTTTCTAGATTTGAGCTCGAACAACTTTACTGGGCCAGTTCCGCTGGAGTTTTCTGTCCCTTGTATGGTTGTCTTCAATG TTAGTCACAACTCTTTATCTGGGGATATTCCAAGATTTTCTAGTAGCCAATGCTCAAATGTGTCCATAGAGATGTTTAGTTCACGTGAAGGAGCGCTTGG TTTCTACTCATCCTTCTTTTATGCCAATACTGTTATGGGAATCACATCTTTTGCTTTTCCTTCAAGTGCTTTGGCTGTGTTGCATGATTTGAGCAACAAT CTTTTCACTGGTTCAGTTCCTGCTTTGTTCGTTGCCTCAGAAAGCTTTTCTCGTAAAGCTTTCTATGGATTTTGGTTGGCTGGTAACTACCTTAGCGGAA ATATTACTACTTACTCTTTTGACCCATGCTCTAATTTAGATGGCCTGGTTTTTGACATTGGGGAGAATAGAGTTGATGGTGAACTGCCTTCAGCCATGGG AAGAAAATGTAAATGCCTTAAATCTCTCAGTTTGGCAGTGAACAGTTTAAATGGCTCAGTTCCTCAGAGTTTCACATATCTAGATTCTCTGGTGAACCTT AATCTCAGCAGTAACGGACTGCAAGGATCTATTCCATCCTTCTTTCGGCAGATGAAAGATTTGAGGGTTCTCTCAGTGTCTAGCAATCATTTTACAGGGG TTATACCATTGGAACTGGCTCAGCTGTCTTCACTTGAGGTTTTGGATCTCTCATCAAATTCTTTGTCTGGCGAGATACCTCCTTACCTTTCAAAACTTGA ACATCTGAATGTTCTGCGTTTAGGTCACAATCATCTTACTGGAAAAATACCATCTGGCTTCATGAACTCTTCTCTTTTGGTACTTGATGTCTCCTTCAAT AATTTATCAGGTCCCCTTCCTCTATATTCAAGTCCCCTTCCTCTAAATTCAAATTTGGTCAAGTGTGACAACTTCCGAGGAAATCCTGATCTCGAGCCAT GTAAAGATGACTCACCAGCCTCTGAATGGGAGCAGCAGCATTCTGGTAATGTCTCTCAGCAACAGGCTAATAGTCCCTCTGGAAGTCATCCGAAGAATAG CAATGGTCTGACTCAAATTGAACTTGCCGCCGTCACATCAGCTGCTATCATTGTCTCTGTCCTTATTATGTTATGTATTTTGTGCATATGCATGAGGAAG TTTGCTTTCTGTTCCACTTCTGGCAACGGTTCAGGTCTGAAGGAGGTTATAACCTGTAATGACATAGGTGTGCAGTTGACATATGAAAACGTTGTAAGGG CTACTGGGGGTTTCAATATTCAGTATTGCATTGGAAGTGGAGGGTTTGGAGCAACATACAAAGCTGAGATTGTTCCTGGTGTTATGGTGGCAGTGAAGCG GCTGTCAATTGGGAGATTCCAAGGATCCCAGCAATTTGGGGCTGAGATTCGAACGCTTGGAAGGATCCAGCATCCACACCTTGTGAAGCTGATAGGCTAT CATGTTAGTGAGTCTGAAATGTTTCTTATATACAATTACTTGCCTGGAGGCAATCTTGAAAAGTTCATCCAGGAGAGGTCAATGAGAGCTGTTGAGTGGA GCATGCTTCACAAGATTGCTCTTGATATTGCCCGCGCACTTGCTTATTTACATGATGAGTGTGTACCTAGGGTACTGCATCGTGACATCAAGCCAAGCAA CATATTGCTCGACAATAAATTTAATGCATATCTCTCTGATTTTGGTCTTGCTAGACTCCTCGGCACTTCCGAGACCCATGCTACTACTGATGTGGCTGGG ACTTTTGGATATGTTGCTCCGGAGTATGCAATGACGTGTCGTGTCTCTGACAAGGCTGATGTATACAGCTACGGTGTTGTTCTTCTAGAATTGATATCTG ACAAGAAAGTCCTGGATCCCTCATTCTCGTCATTTGGTAATGGCTTTAACATTGTCGCGTGGGCATGCATGCTTCTGCGGCAGGGCCGAGCCTCTGAATT TTTCATGGCTGGCCTGTGGGATTCTGGACCTCATGATGACCTCATTGACATACTTCACTTAGGAGCTATGTGTACATGTGAGTCTTTTTCATCTAGACCT TCCATGAGACAAGTGGCCCAGCGTTTGAGAAGGATTCAGCCTCCACCGATTCAGCCTCCACCTTCATAA
AA sequence Show only first row Show all	>Lus10010087 pacid=23158857 polypeptide=Lus10010087 locus=Lus10010087.g ID=Lus10010087.BGIv1.0 annot-version=v1.0 MPPDHFRHIRSGNSWYPLSFSSAAALVVLLCSSFALADDKHALLDFKSALTRDPLGLTSTWDPNDPDGCSWHGVTCDSVSRRVTALRLSPPTDSVACSLF SVSAANGNFSLLFPCLGFNLDALPKLEGKLSPKIAQLSQLRILSLSFNGLSGELPVEIGLIQSLEVLDLGFNAFHGSIPFSLKNFASLRVINLSGNQLNG TIPAFFRQLRDARVVALSFNLLSGSIPTDLGDNCGSMEHLFLNGNSLSGSIPPNLGGCKELRSLVLSSNLLQDDVPSTLGTLANLEVLDLSRNFLSGNIP PELGNCVQLKLLVLKNTYGLLWSRSPASSNSDEDERGEGEFNYFDGNLPDSILKLPNLHVLWAPNLNLEGSFPQIMGPSCNLKMLNLAGNYFVGEIPVSL GNCNSLTFLDLSSNNFTGPVPLEFSVPCMVVFNVSHNSLSGDIPRFSSSQCSNVSIEMFSSREGALGFYSSFFYANTVMGITSFAFPSSALAVLHDLSNN LFTGSVPALFVASESFSRKAFYGFWLAGNYLSGNITTYSFDPCSNLDGLVFDIGENRVDGELPSAMGRKCKCLKSLSLAVNSLNGSVPQSFTYLDSLVNL NLSSNGLQGSIPSFFRQMKDLRVLSVSSNHFTGVIPLELAQLSSLEVLDLSSNSLSGEIPPYLSKLEHLNVLRLGHNHLTGKIPSGFMNSSLLVLDVSFN NLSGPLPLYSSPLPLNSNLVKCDNFRGNPDLEPCKDDSPASEWEQQHSGNVSQQQANSPSGSHPKNSNGLTQIELAAVTSAAIIVSVLIMLCILCICMRK FAFCSTSGNGSGLKEVITCNDIGVQLTYENVVRATGGFNIQYCIGSGGFGATYKAEIVPGVMVAVKRLSIGRFQGSQQFGAEIRTLGRIQHPHLVKLIGY HVSESEMFLIYNYLPGGNLEKFIQERSMRAVEWSMLHKIALDIARALAYLHDECVPRVLHRDIKPSNILLDNKFNAYLSDFGLARLLGTSETHATTDVAG TFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKVLDPSFSSFGNGFNIVAWACMLLRQGRASEFFMAGLWDSGPHDDLIDILHLGAMCTCESFSSRP SMRQVAQRLRRIQPPPIQPPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	1.4	0.9525
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	3.5	0.9468
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	7.3	0.9417
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042664 [exp]	8.4	0.8834
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	14.4	0.9274
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	15.0	0.8961
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	15.2	0.9069
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	15.7	0.9227
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	18.0	0.9086
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	20.0	0.9246

Compare expression of checked genes

Lus10010087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.