Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27680 697 / 0 APL2 ADPGLC-PPase large subunit (.1) AT5G19220 663 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT4G39210 653 / 0 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 628 / 0 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT5G48300 479 / 8e-166 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT1G05610 307 / 4e-99 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT2G39770 45 / 0.0001 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007209 [exp] 1059 / 0 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10034053 [exp] 655 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 640 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10023553 [exp] 632 / 0 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10040437 [exp] 597 / 0 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10025187 [exp] 479 / 2e-165 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 478 / 5e-165 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10042456 [exp] 300 / 7e-96 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 255 / 4e-79 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G110000 [exp] 806 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 727 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 721 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 668 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 662 / 0 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.008G195100 [exp] 647 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.014G171800 [exp] 478 / 5e-165 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.017G001700 [exp] 342 / 1e-111 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.007G146100 [exp] 333 / 6e-109 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010088 pacid=23158853 polypeptide=Lus10010088 locus=Lus10010088.g ID=Lus10010088.BGIv1.0 annot-version=v1.0 ATGGTGGTGGCAGAGTTGCAAAGATGCATGTTTTCTTCAGCAAGTGACACCAGCAACATTATCAACGGTCGTAAAGTGGGTTCAAGGAGTTATCCTAGGA CCTCAATTCCCGGCACTCAGTTGGGGAAGAAAGCTAACAACTTGCCCAAGAAGTTGTCCCATCACAGCAACAATGGCAGGCGCTTTCTCAAAGTCTCTGT TGTTGCCACTGATGTGACTAGGGAGTTTACGGCACCAACTGTTGAGCAGCCTCAAGCAGATCCAAAACTTGTAGCTTCTATAATTTTAGGAGGTGGAGCT GGAACCAGGCTTTTCCCTCTGACTAGAAGAAGGGCTAAACCAGCTGTGCCGATTGGAGGGTGTTATAGACTTATTGATGTTCCCATGAGTAACTGCATAA ACAGTGGGATCAACAAGATTTACATCTTAACTCAGTTCAACTCCCAATCTCTCAATCGCCACATCGCTAGAACATACAACTCTGCAAATGGTGTGAATTT TGGCGATGGGTTTGTGGAGGTTTTGGCGGCGACACAAACACCTGGTGAATATGGGAAGAGGTGGTTTCAAGGCACAGCAGATGCTGTCAGACAATTTATC TGGTTATTTGAGGATGCAAAGTTAAGACACATTGAGAATATTCTAATTCTATCCGGTGATCACATCTATCGGATGGACTACATGGACTTTGTGCAGAAGC ATCTGGATACTGGCGCTGATATATCTGTCTCTTGCATACCTGTTGATGGAAGCCGTGCCTCAGATTTCGGATTGATAAAGATAAACGAAACTGGAAGAAT AAATCAGTTTCTTGAGAAGCCTAAGGGAGATGCTTTGAAATCTATGACAGTCGATACAACCATCCTAGGATTATCAGCTCATGAGGCAAAGAAGTTCCCA CATATTGCATCAATGGGTGTATATGTGTTCAAGACAGATGCGTTACATTACCCGACGGCCAATGACTTTGGATCAGAAATCCTTCCAAGGTCTCTTAAGC ATTACAATGTCCAGGCATATTTATTCAACGGATATTGGGAAGATATTGGAACCATAAGATCTTTCTTTGATGCCAACTTGGCACTAACAGAACAGAACCC CAATTTTCAATTCTCTAATCCAATGAAGCCAATCTTCACTTGTCCCATGTTTCTGCCACCAACCAAAATAGAGAAGTGCCAGGTTAAGAACTCCATAATA TCCCACGGTTGCTTCTTGAACGAGTGCAGTGTTGAACATTCCATCGTTGGGATTCGCTCGAGACTAGAGTATGGAGTTGAGCTCAAGGATACTATGATGA TGGGGGCTGATTACTACCAAACTGAGGCGGAGATAGTAGCCGAACTAGCCGAAGGAAAAGTTCCAGTCGGTGTTGGTAGAGATACCAAGATCAAGAACTG TATCATCGACAAGAATGCTAGGATCGGTTGTAATGTGGTGATAGCAAACAAGGATAAGGTGGAAGAGGCAGAGAGAGCATCAGAAGGATTCTACATCAGA TCAGGAATCACAGTTGTGATGAAAAACTGTACGATTAAAGATGGTACAGTCATATAG
AA sequence Show only first row Show all	>Lus10010088 pacid=23158853 polypeptide=Lus10010088 locus=Lus10010088.g ID=Lus10010088.BGIv1.0 annot-version=v1.0 MVVAELQRCMFSSASDTSNIINGRKVGSRSYPRTSIPGTQLGKKANNLPKKLSHHSNNGRRFLKVSVVATDVTREFTAPTVEQPQADPKLVASIILGGGA GTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIYILTQFNSQSLNRHIARTYNSANGVNFGDGFVEVLAATQTPGEYGKRWFQGTADAVRQFI WLFEDAKLRHIENILILSGDHIYRMDYMDFVQKHLDTGADISVSCIPVDGSRASDFGLIKINETGRINQFLEKPKGDALKSMTVDTTILGLSAHEAKKFP HIASMGVYVFKTDALHYPTANDFGSEILPRSLKHYNVQAYLFNGYWEDIGTIRSFFDANLALTEQNPNFQFSNPMKPIFTCPMFLPPTKIEKCQVKNSII SHGCFLNECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIVAELAEGKVPVGVGRDTKIKNCIIDKNARIGCNVVIANKDKVEEAERASEGFYIR SGITVVMKNCTIKDGTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Lus10010088 [exp]	0	1
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	1.0	0.8922
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	2.8	0.8636
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	3.5	0.8171
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	3.5	0.8412
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10021246 [exp]	6.8	0.7951
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	7.0	0.8207
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	8.4	0.8347
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	9.0	0.8546
AT5G64010			unknown protein		Lus10036635 [exp]	9.5	0.8180
					Lus10039434 [exp]	11.9	0.7283

Compare expression of checked genes

Lus10010088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.