Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02310 146 / 2e-42 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT5G66460 143 / 5e-41 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10890 120 / 2e-32 Glycosyl hydrolase superfamily protein (.1) AT5G01930 119 / 4e-32 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10900 112 / 2e-29 Glycosyl hydrolase superfamily protein (.1) AT4G28320 105 / 5e-27 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT2G20680 104 / 2e-26 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT3G30540 81 / 3e-18 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007210 [exp] 316 / 2e-108 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 258 / 1e-81 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 147 / 3e-42 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 147 / 4e-42 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 145 / 2e-40 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 139 / 2e-39 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 135 / 1e-37 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 115 / 2e-30 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 114 / 5e-30 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184500 [exp] 190 / 2e-59 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 147 / 2e-42 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 137 / 3e-38 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 136 / 3e-38 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 135 / 3e-38 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 133 / 2e-37 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 110 / 2e-28 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 108 / 5e-28 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 106 / 1e-27 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 89 / 8e-22 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010089 pacid=23158860 polypeptide=Lus10010089 locus=Lus10010089.g ID=Lus10010089.BGIv1.0 annot-version=v1.0 ATGGCAGCCTACCTTAAATCAATCGACGGTTGCCATATGCTTGAAGTAGGGCTCAAAGGATTCTACGGCCCTTCCAACCAAAACCTCAATCCTAACAACT GGCCTTTCGGCACTGATTTCCTCTCCAACAATCAGATCCCTTTCATCGACTTTGCTACTACTCATCTTTATGCTGATCTATGGTTGCTGAATTCAACCGA GACTCAAATAGAAGCATACGTGGACAAGTTTCTGGAATCTCGCATCCAAGACCGCAACACAGTGATCGGTAAGCCACTGGTGATGGAAGAATTTGGAAAA TCCTTTAAGCAACATTGGTATAGCTTGGCAGTTAGGGATGCTTACTACAGCAAGATCTATAACTCCATCTACAACAGTTCTAAGCAAGGAGGATCCTTTG CTGGTGGGATCTTCTGGCAGCTCCTGAATCCTGAAATGGACATTTGGGGAGATGGCTATCAAATTGTCCTTCAAAACAGCCCTTCTACTGCTTCCATCAT TGCTCAACAATCTAAAAGGCTCTCTACTCTACCTGCTGTTATATCCTACTAA
AA sequence Show only first row Show all	>Lus10010089 pacid=23158860 polypeptide=Lus10010089 locus=Lus10010089.g ID=Lus10010089.BGIv1.0 annot-version=v1.0 MAAYLKSIDGCHMLEVGLKGFYGPSNQNLNPNNWPFGTDFLSNNQIPFIDFATTHLYADLWLLNSTETQIEAYVDKFLESRIQDRNTVIGKPLVMEEFGK SFKQHWYSLAVRDAYYSKIYNSIYNSSKQGGSFAGGIFWQLLNPEMDIWGDGYQIVLQNSPSTASIIAQQSKRLSTLPAVISY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10010089 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	10.6	0.7636
					Lus10028090 [exp]	17.0	0.7316
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	19.0	0.7399
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	19.0	0.7193
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	22.3	0.7261
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	26.8	0.6911
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	27.2	0.7031
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	28.0	0.7242
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	31.1	0.7085
AT3G27050			unknown protein		Lus10032042 [exp]	32.8	0.7244

Compare expression of checked genes

Lus10010089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.