Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15810 226 / 2e-69 S15/NS1, RNA-binding protein (.1) AT1G80620 224 / 4e-69 S15/NS1, RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007211 [exp] 651 / 0 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10009249 [exp] 303 / 1e-99 AT1G80620 273 / 6e-88 S15/NS1, RNA-binding protein (.1) Lus10038010 [exp] 284 / 1e-91 AT1G80620 275 / 2e-88 S15/NS1, RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178800 [exp] 256 / 1e-80 AT1G80620 254 / 5e-80 S15/NS1, RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [flax] [poplar] S15_NS1 PF00312 [flax] [poplar] Ribosomal_S15 Ribosomal protein S15
Representative CDS sequence Show only first row Show all	>Lus10010090 pacid=23158858 polypeptide=Lus10010090 locus=Lus10010090.g ID=Lus10010090.BGIv1.0 annot-version=v1.0 ATGGCTCTAACCCTTTCCAGAGCAAATCGGAAGCCCCTTGCCAACCATTCTCTCATCCAATTCCTCTCTCCCTTACTCCCATCCTCCTCCTTCTCCACCG TCGCCGATCCTCCTGAGCACAATCCATTAGCCTCTTGTCTAAACGATGTCAAGGCGAGCCTCAAGCAACGAGAAGAACAGAACCAACAGCAGCGGTCATG GAATCCGCCGCCGAGAAACCCTCCGAGTCCGGCTCCCTCTATGACGAATCGCGTTGGCAAAGCTGCCTCTAGCGAAGAAATTAGAAAAATACTATCCGGG TACCGTCCACAATCTCCCGCTACTGGAACTGGCTCCAACTCCACTGAACAGGTACAGCCGCGGCAACAGATAAACATTCAAGACCTATTCCAGCGAAACG CGGTAGCCGGAGGTGACTCTCCAGAAAGCATAGGTATTGCTAACAATCAGCCTTTTCCTAGGCGAGATGGATTTCAGAAAATAACAGAAAGTCTCAGAGG CATGGCTAGACATTCAAACGGCCTCAATTATAGAGTTGTGAATGACACCAGTTCAAGGGCTTGGGGAAGGTCTTCGTCGGCGCCGTTGTTTGGTAATAAT ATACACGGAGTTGGCGGTGCTGGTGAAATTGGGAGGATGGGAGGCGATTTTGAGAAGGTTTATAGCTACACGGAGTTGGGGAATTTGTTGAAGAAATTGC GAACTGGATCGCAGAAGCAAGGGCAGAAAGGAGGGTTTTCGATACAGGAGTTAAATGAGAGGTTGAGTAAGGTAAGGGAACAGGAGAAGGCAGAGTACGA TTCCAAACCTGAATATATGAACCTCAGGAACAGCTTACAGACGTTGCGATCTGTGGAGCAGACCAAGATGGGTCCAGTGTACAATGCAAACATATTGAGT CAGTTGGGTGCAACTCCAGATTATATGATGCATCCTCCAAAGGAGAAATTGGTTGATAAGTATTTTCATCCAGATAACATGTCTTCTCAAGAGAAAATGA AACTTGAGCTTGCAAAAGTTAGGGAGGAGTTCAAGATGTCTGAGTCAGATTGTGGATCTGCCCGCGTTCAAGTGGCTCAACTTACCACGAAGATCAAGCA TCTATCATCAGTCCTGCACAAAAAGGACAAGCATTCTCGGAAGGGTCTTCAGGAAATGGTACAAAAGAGGAAGAAGCTGCTGAGGTATCTACGAAGAACC GACTGGGATTCGTTCACCTTTGTTCTTTCGAAACTAGGTCTCCGTGACAATCCAGACTACAAGAATTTATGA
AA sequence Show only first row Show all	>Lus10010090 pacid=23158858 polypeptide=Lus10010090 locus=Lus10010090.g ID=Lus10010090.BGIv1.0 annot-version=v1.0 MALTLSRANRKPLANHSLIQFLSPLLPSSSFSTVADPPEHNPLASCLNDVKASLKQREEQNQQQRSWNPPPRNPPSPAPSMTNRVGKAASSEEIRKILSG YRPQSPATGTGSNSTEQVQPRQQINIQDLFQRNAVAGGDSPESIGIANNQPFPRRDGFQKITESLRGMARHSNGLNYRVVNDTSSRAWGRSSSAPLFGNN IHGVGGAGEIGRMGGDFEKVYSYTELGNLLKKLRTGSQKQGQKGGFSIQELNERLSKVREQEKAEYDSKPEYMNLRNSLQTLRSVEQTKMGPVYNANILS QLGATPDYMMHPPKEKLVDKYFHPDNMSSQEKMKLELAKVREEFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLQEMVQKRKKLLRYLRRT DWDSFTFVLSKLGLRDNPDYKNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	0	1
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10011363 [exp]	3.0	0.7058
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	7.6	0.7080
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	9.2	0.7396
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10005459 [exp]	30.5	0.6785
AT2G26680			unknown protein		Lus10005721 [exp]	34.5	0.6605
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	39.9	0.6691
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	52.1	0.6519
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	55.7	0.6429
AT4G15010			Mitochondrial substrate carrie...		Lus10001980 [exp]	59.3	0.6206
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	60.0	0.6369

Compare expression of checked genes

Lus10010090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.