Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02305 520 / 0 Cysteine proteinases superfamily protein (.1) AT4G01610 511 / 3e-178 Cysteine proteinases superfamily protein (.1.2) AT1G02300 489 / 2e-169 Cysteine proteinases superfamily protein (.1) AT4G16260 255 / 5e-79 Glycosyl hydrolase superfamily protein (.1) AT3G57270 233 / 9e-71 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57240 229 / 6e-69 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57260 206 / 1e-60 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G26830 191 / 9e-54 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 185 / 2e-51 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G77790 179 / 1e-50 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007212 [exp] 796 / 0 AT1G02305 532 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10002807 [exp] 242 / 9e-74 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10014110 [exp] 229 / 2e-69 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 224 / 3e-67 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 223 / 8e-67 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 228 / 2e-66 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 216 / 4e-64 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 212 / 1e-62 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10027860 [exp] 211 / 5e-62 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G184300 [exp] 553 / 0 AT1G02305 550 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.002G184201 [exp] 541 / 0 AT1G02305 500 / 9e-179 Cysteine proteinases superfamily protein (.1) Potri.014G109801 [exp] 528 / 0 AT1G02305 515 / 0.0 Cysteine proteinases superfamily protein (.1) Potri.001G255100 [exp] 301 / 2e-96 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 254 / 4e-78 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 246 / 1e-75 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 241 / 2e-74 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 241 / 4e-74 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 241 / 1e-73 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 230 / 1e-69 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08127 [flax] [poplar] Propeptide_C1 Peptidase family C1 propeptide CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10010091 pacid=23158913 polypeptide=Lus10010091 locus=Lus10010091.g ID=Lus10010091.BGIv1.0 annot-version=v1.0 ATGGCGCATCGCCGACTAGTAACAATTCCCAGGATTCATGGGATCATATTGATGTTGTTCTGCTTAAACTTGACTGCAATACTGGCACTGCCACCAAATA TTGGAGTGTGCAATGGGCGTGTGGCCGACAACTTACCACCTGAAGCCGACGTAGTAGCTTTCTACGACACAAATGGAATTACCAAAATGAGGATATACGA AGCCAACCAATTGACCCTCCAAGCACTAAAGGGAACCAACATCCAACTCGTCCTAGGCGTCCCTAACGAAGTCATCCCATCATTAGCCTCTGATGCAACT GCCTGGGTCCATACCAACATCTTGTCCTACTACCCTGCCGTCCAATTCCGCTACATTGCCGTGGGGAACGAGATCGGCCCCAATGACCCTGTTGCTCCTA GCATCCTCCCGGCTATTACCAACATCAACAACATCCTTGCCGCCAACAACGCTAGTCGTGTGAAGGTCTCGACAGCAATCAGGTTAGACTTGTTAGGGAC ATCGTATCCGCCATCAGCCGGGGCATTTGCAGACAGTGCATCAGCATTTATCGTACCGATCGTGCAATACTTGGCAAACAACAACGCACCGTTACTGGCT AATGTTTACCCTTATTTCGCTTACATTGGAAACCCGGGACAAGTTGATTTGAAATACTCTATGTTTGGATCCCTAGGCCAAACAGCGGTCCAAGATGGCC CGTATGGGTACTCTAACCTTTTCCACGCCATGCTTGATTCGCTTTATTCAGCTCTTGAGAAGGTTGCTGCTCCCAACGTTCAGGTGGTTGTTTCGGAGAC TGGGTGGCCATCTGCAGGTGGAGATGGAGCGACAATAGATAATGCTTCTGCATATTATTTGGGTGTGACAAATCCTACTGTGACGAGCGGAACACCCAAA AAACCTGGGCAACCGATTGAGACTTATTTGTTTGCGATATTTGATGAAAATCAGAAACCGAATGCACCATCAGAACAACATTTTGGACTGTTCACACCTC AGAAACAAGCCAAATACCAAGTCTCAGCAACAGAGATCAAGCTTAATCTTAGGTCTAGGATCCTTCAGGAATCGATCGTTGATGTAGTCAACGGAAATCC AAGTGCAGGATGGAAGGCTGAAATCAGCCCTCGGTTCTCTAATTATACTGTTGCCGAATTCAAATATATACTGGGAGCCAAACCAACTCCAAAGAAGGAA CTCCTTGGTGTTCCTGTCATGAGACATCCAAAGACCCTAGCTTTACCAAAGGAATTTGATGCCAGAAAGGCTTGGCCACAGTGTGCCACTCTTACAAGAA TTCTAGGTTACGTCCTTGGTCACTGTGGGTCTTGCTGGGCATTTGGGGCAGTAGAAGCATTGTCGGACCGCTTTTGCATTCAATTCGGCATGAACATTTC CTTGTCTGCCAATGATCTTTTAGCCTGCTGTGGATTCCTCTGCGGGGAAGGTTGCGATGGAGGGTATCCTATTTCTGCATGGAGGTACTTCGTCCACAAT GGTGTCGTGACCGAGGAGTGTGATCCATACTTTGATGATATCGGTTGTTCCCACCCGGGATGTGAGCCTGCATTTCCTACTCCCAAATGTTCGAGAAAGT GCGTTGAGAAGAACCAGCTGTGGAGTGAGGAAAAGCACTATGGAGTTAATGCATATAGAGTCAGTTCTTCCGATGTCGATAACATCATGGCTGAAGTTTA TAAGAATGGACCAGTTGAGGTTGCATTTACAGTCTATGAGGACTTTGCACATTATAAATCTGGAGTTTACAAGCACATAACGGGTGGTGAAATGGGCGGC CATGCTGTTAAGCTTATCGGCTGGGGGACTACCGAAGATGGAGAAGACTATTGGCTTCTCGCCAACCAGTGGAACAGAAGCTGGGGTGAAAATGGATACT TCAGGATAAGAAGAGGAACAAACGAGTGTGGTATTGAAGAGGATGTGGTGGCTGGGAAGCCCTCGTCCAGGAATATTGTTAAAGAGGTCATTACCAATGA TGCTGCTGATAAAAGAGAGGCCGTTGCTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10010091 pacid=23158913 polypeptide=Lus10010091 locus=Lus10010091.g ID=Lus10010091.BGIv1.0 annot-version=v1.0 MAHRRLVTIPRIHGIILMLFCLNLTAILALPPNIGVCNGRVADNLPPEADVVAFYDTNGITKMRIYEANQLTLQALKGTNIQLVLGVPNEVIPSLASDAT AWVHTNILSYYPAVQFRYIAVGNEIGPNDPVAPSILPAITNINNILAANNASRVKVSTAIRLDLLGTSYPPSAGAFADSASAFIVPIVQYLANNNAPLLA NVYPYFAYIGNPGQVDLKYSMFGSLGQTAVQDGPYGYSNLFHAMLDSLYSALEKVAAPNVQVVVSETGWPSAGGDGATIDNASAYYLGVTNPTVTSGTPK KPGQPIETYLFAIFDENQKPNAPSEQHFGLFTPQKQAKYQVSATEIKLNLRSRILQESIVDVVNGNPSAGWKAEISPRFSNYTVAEFKYILGAKPTPKKE LLGVPVMRHPKTLALPKEFDARKAWPQCATLTRILGYVLGHCGSCWAFGAVEALSDRFCIQFGMNISLSANDLLACCGFLCGEGCDGGYPISAWRYFVHN GVVTEECDPYFDDIGCSHPGCEPAFPTPKCSRKCVEKNQLWSEEKHYGVNAYRVSSSDVDNIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHITGGEMGG HAVKLIGWGTTEDGEDYWLLANQWNRSWGENGYFRIRRGTNECGIEEDVVAGKPSSRNIVKEVITNDAADKREAVAAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	0	1
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	3.0	0.9268
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	4.4	0.9283
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10011064 [exp]	6.0	0.9124
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	7.7	0.9144
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	8.5	0.9163
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	11.1	0.9002
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	12.0	0.9239
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	14.4	0.8973
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	15.0	0.9216
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	16.1	0.9123

Compare expression of checked genes

Lus10010091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.