Plant FIBer expression Database

Lus10010092 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46915 702 / 0 Protein of unknown function (DUF3754) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007214
[exp]
1377 / 0 AT2G46915 699 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10031975
[exp]
88 / 8e-18 AT3G19340 754 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10012581
[exp]
86 / 4e-17 AT3G19340 787 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10035127
[exp]
84 / 9e-17 AT3G19340 749 / 0.0 Protein of unknown function (DUF3754) (.1)
Lus10041512
[exp]
79 / 5e-15 AT3G19340 756 / 0.0 Protein of unknown function (DUF3754) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G183900
[exp]
880 / 0 AT2G46915 744 / 0.0 Protein of unknown function (DUF3754) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12576 DUF3754 Protein of unknown function (DUF3754)
Representative CDS sequence
>Lus10010092 pacid=23158907 polypeptide=Lus10010092 locus=Lus10010092.g ID=Lus10010092.BGIv1.0 annot-version=v1.0
ATGTTTTCGTTGAGAAATTACGGCACCGCAGCTCCGTCTGCTGCATCGTTTACACAGCCATGGCGTCGTACTCCTTCTCCCTTCTTCTTCCCCCATTCCC
CCCCGCTTCAACTGCTTCGTTTTTCTTTGAAAGTAGAGGAGTTATCGATGGAGGATTTTTCTGATACAAACGGAAGCCTCAATAGCTCATTGACGGCGAC
CACGGCCAACAGTTTCAGCAGTTTGCTTCCGAGAATTCCAGAGCAAGAAGAAGAAGAGCAGAAGCAGGAGGAAGACGAAGAGGAGAAGGAAGAGGGCGAT
GAGAAAGGGATTTCCAGAATACGAGTGCCGAGGCAGAAGTACATTCCGGTTTCCAAGGCGGATATTCTGGACGCCATTCTTCTCAAGTTTTTCGACTCTC
CAGACGACGCCGATCAGTTCCTCAACCTATCTTCGTGTCTGGATTCCGTACTTAATGCGGAACACAAGAACATTTTGGAAGAGATGCGAACTGACTATTC
CGTTCTTCAATCATCTGGTACCGAGGGAATGCTTAACGAAGGATCTTCAACTGTGGCCGAAGAACCAATTGTTAATGGGGAGGATGTTAGCTCTGTTCTT
GATGACACTGTCAACCGAATTGTGAGTGATGAGAAGAACTTGGGGGAAGAGGCTGAAGTAAACATGCCTTTGCATTTCAACTATGGTCTGGATTTCAGGA
ATCTTTTACGCTATTCAGCTGGAAACGGGAGGAGGATTAAGAGTGCGAGCCCTAGACATGCAGTTGCTGCTCGTTTTCAGCGTGCTTTCATGCAGCTTCT
CGATAATGCACAGTTTCAGGAACTATCAGCTAGTGATTTGATGTTGACATCTGCTTTGAACTCGGACTATCTCCTTACATTACCAATATATGTGGACTGG
AAGAAAGCATCTGAATCCAACGCAATAATATTCAGGAGGGGTTATGCAACTGAGAGGGATAAAGGGTTGCTGATTGGTGAAAAGGTGGACTATATACAGT
CCAGACTTCTTCAAAAGATCTTCTTCCTTGCCTCAAAGCCATTGGGAAAAGTTGGTAAATGGATAAAACAGTCAATCAGAGAGGCTTCTGAGACACAAGA
AGCACAGCATTGGATCAAAAAGATGGCGCCATGGGTTGAGGAATTATCTTCTTTAAGGAGTTCGTTCATTACTGGAGATCAAGCTTCAGGTGATCCACAA
GAACCAAATGAAATATCAGATAATGATCTTCCCATTTGGCTGGCAGCACAGAGAGCAGTAAGTCGTTATGAAGGGTTCCTGTCTCCAAGTGGACCCCGGG
AAAGGCTGTTTAGGAGGCTTATGACTTTGATAGGGCTTGTCCCTCCTATACCAGAAATGTCATTTGAACACGGCAGTGAAAGCAATGACTCTGAAACTCA
TTTGAGGCCAATATTCTTGTCAAGGATATCATTGAGTGATATATGGAAGCCTGCTAAAAGAAAATACTGTGGAAACAATCCATGGAAGATGTTAAGAAAA
GCTTTCTCCATTGTTCTCTCACAGTCAGTTCTCCAGGAGCCTGCATTTGAAGAACTAATTTTGCTCTATACTGAGGATGAGCATGAGAATGAAAGGGATA
ATACAGATAAAGATGAGGTTGCATCTCTGCGATTGAAGATTTATGAGAAAATTCCAATTCCAGACTTACTAGTTGTTTTTCCTCACAAGAAGCTCTCCTT
CCGTATACTAGACACGGTTCGCTTGGATGCTACAGCATTACTGGGACTGTCCGCATATGTCATTAACTACAAGTTTGAGAACATATTATCCTCCCCGTCA
GCATTTGGACTTGATGCCATTGCCCTCACTGCCCTAATAGTATACGTCACCCGAGTGGCATTGGGTTACAAACAAACATGGGATCGTTATCAACTACTTG
TTAACAGGACACTTTATGAGAAAACACTAGCAAGTGGGTTTGGCTCTGTGCATTTTCTTCTGGATGCGTCTGAACAGCAGCAATACAAGGAGGCTATTCT
GAGCTATGCGATTCTTCTCAAAGCAAAGAATGACCAGGGCACAACTATGAAAAGCATTGGAGATGAATGCGAGCGTTTCATTTACGATGCTTTCAGAGTA
AAAGTGGAGATGCCAGTGGATAACGCAGTGAAGACGTTGCTGAGACTAGGGCTTGCTATGGAAACACCTCCTGGTTCTGAAGGTGATGGAACAGGCAGGA
AAGTAAAGGCCATTCCCTGCGAAAAGGCGTACGAGGTGCTTAAACAACGTTGGATTGGATTGCTTGGTTAA
AA sequence
>Lus10010092 pacid=23158907 polypeptide=Lus10010092 locus=Lus10010092.g ID=Lus10010092.BGIv1.0 annot-version=v1.0
MFSLRNYGTAAPSAASFTQPWRRTPSPFFFPHSPPLQLLRFSLKVEELSMEDFSDTNGSLNSSLTATTANSFSSLLPRIPEQEEEEQKQEEDEEEKEEGD
EKGISRIRVPRQKYIPVSKADILDAILLKFFDSPDDADQFLNLSSCLDSVLNAEHKNILEEMRTDYSVLQSSGTEGMLNEGSSTVAEEPIVNGEDVSSVL
DDTVNRIVSDEKNLGEEAEVNMPLHFNYGLDFRNLLRYSAGNGRRIKSASPRHAVAARFQRAFMQLLDNAQFQELSASDLMLTSALNSDYLLTLPIYVDW
KKASESNAIIFRRGYATERDKGLLIGEKVDYIQSRLLQKIFFLASKPLGKVGKWIKQSIREASETQEAQHWIKKMAPWVEELSSLRSSFITGDQASGDPQ
EPNEISDNDLPIWLAAQRAVSRYEGFLSPSGPRERLFRRLMTLIGLVPPIPEMSFEHGSESNDSETHLRPIFLSRISLSDIWKPAKRKYCGNNPWKMLRK
AFSIVLSQSVLQEPAFEELILLYTEDEHENERDNTDKDEVASLRLKIYEKIPIPDLLVVFPHKKLSFRILDTVRLDATALLGLSAYVINYKFENILSSPS
AFGLDAIALTALIVYVTRVALGYKQTWDRYQLLVNRTLYEKTLASGFGSVHFLLDASEQQQYKEAILSYAILLKAKNDQGTTMKSIGDECERFIYDAFRV
KVEMPVDNAVKTLLRLGLAMETPPGSEGDGTGRKVKAIPCEKAYEVLKQRWIGLLG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46915 Protein of unknown function (D... Lus10010092
[exp]
0 1
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Lus10023056
[exp]
6.5 0.8149
AT5G45170 Haloacid dehalogenase-like hyd... Lus10018280
[exp]
8.5 0.8248
AT5G35970 P-loop containing nucleoside t... Lus10024527
[exp]
14.4 0.8143
AT1G79600 Protein kinase superfamily pro... Lus10035701
[exp]
18.4 0.7956
AT1G52510 alpha/beta-Hydrolases superfam... Lus10035875
[exp]
19.7 0.8168
AT4G25290 DNA photolyases;DNA photolyase... Lus10031137
[exp]
23.3 0.7989
AT3G49190 O-acyltransferase (WSD1-like) ... Lus10017718
[exp]
25.7 0.8125
AT4G25290 DNA photolyases;DNA photolyase... Lus10031716
[exp]
26.7 0.7985
AT4G15440 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) Lus10031540
[exp]
30.2 0.8049
AT1G24490 ALB4, ARTEMIS ARABIDOPSIS THALIANA ENVELOPE ... Lus10006454
[exp]
30.3 0.7421

Lus10010092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.